PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538736.1_FGP054
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 536aa    MW: 60235.6 Da    PI: 4.657
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538736.1_FGP054genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82276.21e-23110647142
             DUF822  47 nneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.. 133
                        +n+Vl+AL+r+AGw+v++DGtt+r++s+pl   +++  g ++ +s+e+++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++  
  KN538736.1_FGP054   1 MNDVLAALARAAGWTVHPDGTTFRASSQPLhtPTPQLPGIFHVNSVETPSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVAEQsi 92 
                        7****************************998999**************99899*********************************99877 PP

             DUF822 134 .....asllpvlsv 142
                              ++ +v+s 
  KN538736.1_FGP054  93 knekyGNSDSVSSL 106
                        66655444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.2E-211109IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.56E-139127530IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-123127407IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.2E-61152409IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-34165179IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-34186204IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-34299321IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-34372391IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.807.8E-17438531IPR013781Glycoside hydrolase, catalytic domain
PRINTSPR007501.8E-34450472IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MNDVLAALAR AAGWTVHPDG TTFRASSQPL HTPTPQLPGI FHVNSVETPS FTSVLNSYAI  60
GTPLDSQASM LQTDDSLSPS SLDSVVVAEQ SIKNEKYGNS DSVSSLNCLE NHQLTRASAA  120
LAGDYTRTPY IPVYASLPMG IINSHCQLID PEGIRAELMH LKSLNVDGVI VDCWWGIVEA  180
WIPHKYEWSG YRDLFGIIKE FKLKVQVVLS FHGSGETGSG GVSLPKWVME IAQENQDVFF  240
TDREGRRNME CLSWGIDKER VLRGRTGIEA YFDFMRSFHM EFRNLTEEGL ISAIEIGLGV  300
SGELKYPSCP ERMGWRYPGI GEFQCYDRYM QKNLRQAALS RGHLFWARGP DNAGYYNSRP  360
HETGFFCDGG DYDSYYGRFF LNWYSGILID HVDQVLSLAT LAFDGVETVV KEIKVLCSDE  420
SEFEDHMSLQ NYVEFTIQEN NEAFADPEGL TWQVMNAAWD HGLSISVESA LPCLDGEMYS  480
QILDTAKPRN DPDRHHVSFF AYRQLPSFLL QRDVCFSELG NFVKCMHGEA TQIVEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A2e-9713052911444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538736.1_FGP054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA2X0H40.0A2X0H4_ORYSI; Beta-amylase
STRINGOMERI02G03000.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]