PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538736.1_FGP053
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 421aa    MW: 45881.3 Da    PI: 5.3187
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538736.1_FGP053genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-11303333131
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeL 31 
                        e+elk+++rkq+NRe+ArrsR+RK+  ++ L
  KN538736.1_FGP053 303 ERELKKQKRKQSNRESARRSRLRKQNIMDSL 333
                        89***********************999887 PP
2bZIP_130.58.1e-103413802463
                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        ++ae+eeL  ++++L aeN++L+ ele++kke+++l s++
  KN538736.1_FGP053 341 FQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHN 380
                        59**********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-1787165IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.4E-20182285No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-13301377No hitNo description
PfamPF001708.0E-9303333IPR004827Basic-leucine zipper domain
SMARTSM003388.8E-12303382IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-6306364No hitNo description
CDDcd147021.19E-19308373No hitNo description
PROSITE patternPS000360310325IPR004827Basic-leucine zipper domain
PfamPF001706.0E-7342380IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MHMRLVNATG FRWYTRKLRI DEDGDVADEF LDEVVPEISI NNDATPAGRY QVKYNTKSAA  60
LSMRKQISVI DGDICHSLEY QGRLRWMGTN DPGTPSKATK ASEPEQSPAT TSGTTAPVYP  120
EWPGFQAYSA IPPHGFFPPP VAASPQAHPY MWGAQGVHPF NHYPMPANGN VETTGTAPGA  180
SEINGKNELG RTSGPSANGI TSHSESGSES ESEGSDANSQ NDSHSKENDV KEDGSSQNGM  240
SHTALNQNMS MAPTQTGVVI GGVAPTTNLN IGMDYWAAAG SSPVPAMHGK APSGSVRGEQ  300
WDERELKKQK RKQSNRESAR RSRLRKQNIM DSLIEAPKYL FQAECEELSV RADNLRAENS  360
SLRAELERIK KEYEALLSHN ASLKEKLEGN SDSIPDMNEQ NDTNGTHQKQ QDSDAQPNDA  420
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319325RRSRLRK
2319326RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538736.1_FGP053
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119010.0AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence.
GenBankAK1120090.0AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626323.10.0transcription factor HBP-1a
RefseqXP_015626324.10.0transcription factor HBP-1a
SwissprotP239221e-136HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLA0A0E0CEV70.0A0A0E0CEV7_9ORYZ; Uncharacterized protein
STRINGOMERI02G02910.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.14e-55basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]