PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538734.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 1159aa    MW: 125461 Da    PI: 7.8785
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538734.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.55e-07429446118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H Cq +CH+GpC++C
  KN538734.1_FGP012 429 CGNHACQDICHPGPCGEC 446
                        ****************** PP
2zf-NF-X122.72.2e-07487504118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG H+C+ +CHeG+CppC
  KN538734.1_FGP012 487 CGVHRCKVTCHEGDCPPC 504
                        ****************** PP
3zf-NF-X116.32.1e-05582600119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H Cq lCH G CppC 
  KN538734.1_FGP012 582 CGQHGCQLLCHSGHCPPCL 600
                        ******************6 PP
4zf-NF-X118.73.9e-06692708117
           zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                        CG+H C++ CH+ pC+p
  KN538734.1_FGP012 692 CGMHACNRSCHPSPCDP 708
                        ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.86E-7179229No hitNo description
SMARTSM001849.9E-5183222IPR001841Zinc finger, RING-type
CDDcd001620.00247183226No hitNo description
PROSITE profilePS5008911.058183223IPR001841Zinc finger, RING-type
CDDcd060082.46E-4285348No hitNo description
SMARTSM004380.023310328IPR000967Zinc finger, NF-X1-type
PfamPF014228.7312327IPR000967Zinc finger, NF-X1-type
CDDcd060081.47E-11355403No hitNo description
PfamPF014224.5365382IPR000967Zinc finger, NF-X1-type
SMARTSM004380.69365384IPR000967Zinc finger, NF-X1-type
CDDcd060082.07E-8419462No hitNo description
PfamPF014221.3E-4429446IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3E-4429448IPR000967Zinc finger, NF-X1-type
CDDcd060081.13E-13477525No hitNo description
PfamPF014225.8E-6487504IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001487506IPR000967Zinc finger, NF-X1-type
CDDcd060081.25E-8572624No hitNo description
PfamPF014220.0018582599IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2E-4582601IPR000967Zinc finger, NF-X1-type
CDDcd060082.40E-4629677No hitNo description
SMARTSM004380.62639657IPR000967Zinc finger, NF-X1-type
PfamPF014220.0026692708IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029692727IPR000967Zinc finger, NF-X1-type
PfamPF014229.5729755IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16736757IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MTSVPPLPSS KTAANPNPPA TIAFHAYATH RARLSRLLLD GCHDRPKMTY SRGLGRLPAS  60
TLRGCAFGHG GAIAALMLFD EMPDRASALP LQLDINNHQS PCVLLSKSMW KTGVIVAVFY  120
CFLKQLAEFS DTDQQTVRGQ DARNNETEPI LPRKRVVFSY GATEEQPESS MLPSEDTCSE  180
NVCKICYDAP RSCFFIPCGH GFACFTCARR IAEDKNQACP ICRRLIHRWA RSPASAADAS  240
DPDSSWRCPG CQSVHTVPAR ELAYTCFCGR RREPPNDLFL TPHSCGEPCS KPLEKADPAM  300
KGDDAAATRC PHVCVLQCHP GPCPPCKAFA PDRLCPCGKQ TIVRRCADRT TPVTCGQRCD  360
RLLPCRRHCC EKVCHTGPCG DCNVLISARC FCGKKTETLL CGEMELKGNL SEKDGVFSCS  420
EACSHMLSCG NHACQDICHP GPCGECELMP GKVTACHCGK TRLLEKRASC LDPIPTCDKV  480
CDKKLPCGVH RCKVTCHEGD CPPCVVRVEQ RCRCGSSGQM VECYKVLEEE FRCNKPCGRK  540
KNCGRHRCSE CCCPLSKPLA QLEGGNWDPH LCQIPCGKKL RCGQHGCQLL CHSGHCPPCL  600
ETIFNDLTCA CGRTSIPPPL PCGTPTPSCP HQCLVPQPCG HPATHQCHFG DCPPCVVPVM  660
RECIGGHVVL RNIPCGSKDI RCNQPCGKNR QCGMHACNRS CHPSPCDPPP ANGDASSSTG  720
GRASCGQVCG APRRECKHTC TAPCHPSSPC PDLRCEFPMT IACSCGRITA TVPCGAGGTA  780
NGDNMFEVSI IQKLPMPLQP VESDGRRVPL GQRKLSCDED CAKMERKRVL AEAFDITPPN  840
LDALHFGENS NASDLLSDLF RREPKWVMAI EERCKFLVLG KTRGNSSGNL KVHVFCHMTK  900
DKRDAIRVIA DRWKLSVQAA GWEPKRFITI HPTPKSKAPA RILGSKPGVS VAASHPFFDP  960
LVDMDPRLVV AMLDLPRDAD VSALVLRFGG ECELVWLNDK NAVAVFNDPA RAATALRRLD  1020
YGSAYQGAAV FLPSSSAQPG NVWVAGQKDG VAATKSSANP WKKATASEPD PSSGDWTGVL  1080
GQAPGSVWRR GGDTVAQVMG TSNRWNVLES EAATSSRPVE ESKPAPRTDA GSSAGPSAVP  1140
PVSKMQPEVE VDDWEEACE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538734.1_FGP012
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D3GEY00.0A0A0D3GEY0_9ORYZ; Uncharacterized protein
STRINGOBART06G09580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1