PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538733.1_FGP021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 174aa MW: 18782.4 Da PI: 4.0186 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.4e-07 | 38 | 77 | 4 | 43 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 ++++ eq+++Le+ F +++++ ++++++A+ lgL+ rq KN538733.1_FGP021 38 KRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQ 77 4567789******************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.4E-6 | 30 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.71E-7 | 37 | 77 | No hit | No description |
Pfam | PF00046 | 7.1E-5 | 38 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-7 | 44 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEQKDEAEMA EAEDDDEEEV DEDMAGVHAA SCGLGEKKRR LALEQVRALE RSFDTDNKLD 60 PDRKARIARD LGLQPRQASP YSGAAFIGFG PSFLVDDASA ATVGCSSSLP ALESRWHGPY 120 SDDSCKGGVY GFTEEWLAAC SGEMAGNDAA GFFSDEHASN LNFGWCASVN EGWE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538733.1_FGP021 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121489 | 1e-155 | AC121489.2 Oryza sativa Japonica Group chromosome 3 clone OJ1217B09, complete sequence. | |||
GenBank | AK060119 | 1e-155 | AK060119.1 Oryza sativa Japonica Group cDNA clone:006-308-F01, full insert sequence. | |||
GenBank | AK101522 | 1e-155 | AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence. | |||
GenBank | AK105644 | 1e-155 | AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence. | |||
GenBank | AP014959 | 1e-155 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT831039 | 1e-155 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628283.1 | 7e-64 | homeobox-leucine zipper protein HOX13 isoform X1 | ||||
Swissprot | A2XDD6 | 7e-65 | HOX13_ORYSI; Homeobox-leucine zipper protein HOX13 | ||||
Swissprot | Q10QP3 | 6e-65 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A0D3FET4 | 6e-87 | A0A0D3FET4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G06560.1 | 3e-63 | (Oryza glumipatula) | ||||
STRING | ORUFI03G06390.1 | 3e-63 | (Oryza rufipogon) | ||||
STRING | OS03T0188900-01 | 3e-63 | (Oryza sativa) | ||||
STRING | ONIVA02G06360.1 | 3e-63 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 1e-16 | homeobox protein 5 |
Publications ? help Back to Top | |||
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