PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538731.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 239aa MW: 27135.4 Da PI: 6.8005 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.8 | 7.8e-08 | 182 | 215 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + KN538731.1_FGP005 182 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 215 569*****************************87 PP | |||||||
2 | ELK | 29.8 | 1.3e-10 | 136 | 157 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ KN538731.1_FGP005 136 ELKHELKQGYREKLVDIREEIL 157 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 6.8E-14 | 21 | 74 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.9E-11 | 35 | 73 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0014 | 136 | 157 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 136 | 156 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.0E-6 | 136 | 157 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 156 | 219 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-10 | 158 | 223 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 158 | 223 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.25E-11 | 159 | 220 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 163 | 220 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-18 | 176 | 215 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAFHYQDHAL AMDAAAAAAE TGGHHHPGHF VYQTHYVLLL CSFKEQLQQH VRVHAMEAVM 60 ACWELEQTLQ SLTVVTLTAG ASPGEGSGAT MSDDEDNQVD SESNMFDGND GSDGMGFGPL 120 MLTEGERSLV ERVRQELKHE LKQGYREKLV DIREEILRKR RAGKLPGDTA STLKAWWQAH 180 SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PASSSSDKSK RKRYRVVDF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 232 | RKRNWHSNPASSSSDKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538731.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007628 | 0.0 | AB007628.2 Oryza sativa Japonica Group HOS59 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656302.1 | 1e-133 | PREDICTED: homeobox protein knotted-1-like 11 isoform X2 | ||||
Refseq | XP_006656303.1 | 1e-133 | PREDICTED: homeobox protein knotted-1-like 11 isoform X3 | ||||
Refseq | XP_015693734.1 | 1e-133 | PREDICTED: homeobox protein knotted-1-like 11 isoform X1 | ||||
Swissprot | Q94LW4 | 1e-131 | KNOSB_ORYSJ; Homeobox protein knotted-1-like 11 | ||||
TrEMBL | B9FQ74 | 1e-143 | B9FQ74_ORYSJ; Uncharacterized protein | ||||
STRING | OBART06G22760.1 | 1e-135 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-109 | KNOTTED1-like homeobox gene 3 |