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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KN538730.1_FGP048 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | CAMTA | ||||||||
| Protein Properties | Length: 1988aa MW: 222346 Da PI: 8.0853 | ||||||||
| Description | CAMTA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CG-1 | 94.7 | 7.8e-30 | 944 | 1033 | 5 | 80 |
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg..............vev 80
+rwl ++ei++iL+n++++ l++e++++p+sgsl++++rk++ryfr+DG++w+kkkdg tv+Edhe+LK + ev
KN538730.1_FGP048 944 INRWLCPSEICEILKNYRSFFLATEPPNKPPSGSLFVFDRKILRYFRNDGHNWRKKKDGMTVKEDHERLKCDYlsfrirltvvcqssLEV 1033
68********************************************************************98756665555555555555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd14798 | 1.45E-9 | 15 | 132 | No hit | No description |
| SuperFamily | SSF52540 | 7.89E-42 | 170 | 395 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 3.8E-23 | 186 | 306 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 8.8E-17 | 191 | 304 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 7.2E-9 | 204 | 219 | No hit | No description |
| PRINTS | PR00364 | 7.2E-9 | 276 | 290 | No hit | No description |
| Pfam | PF00931 | 4.5E-17 | 311 | 421 | IPR002182 | NB-ARC |
| SuperFamily | SSF52058 | 2.21E-22 | 460 | 854 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 6.2E-9 | 541 | 832 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 7.2E-9 | 685 | 701 | No hit | No description |
| PROSITE profile | PS51437 | 41.854 | 936 | 1067 | IPR005559 | CG-1 DNA-binding domain |
| SMART | SM01076 | 1.7E-24 | 939 | 1040 | IPR005559 | CG-1 DNA-binding domain |
| Pfam | PF03859 | 4.8E-25 | 944 | 1015 | IPR005559 | CG-1 DNA-binding domain |
| Gene3D | G3DSA:2.60.40.10 | 1.7E-5 | 1520 | 1605 | IPR013783 | Immunoglobulin-like fold |
| Pfam | PF01833 | 1.3E-5 | 1520 | 1598 | IPR002909 | IPT domain |
| SuperFamily | SSF81296 | 8.4E-17 | 1520 | 1606 | IPR014756 | Immunoglobulin E-set |
| SuperFamily | SSF48403 | 7.62E-15 | 1700 | 1803 | IPR020683 | Ankyrin repeat-containing domain |
| Gene3D | G3DSA:1.25.40.20 | 1.4E-15 | 1702 | 1805 | IPR020683 | Ankyrin repeat-containing domain |
| CDD | cd00204 | 4.41E-11 | 1703 | 1801 | No hit | No description |
| PROSITE profile | PS50297 | 15.459 | 1709 | 1813 | IPR020683 | Ankyrin repeat-containing domain |
| PROSITE profile | PS50088 | 8.736 | 1742 | 1774 | IPR002110 | Ankyrin repeat |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1988 aa Download sequence Send to blast |
MEAPPLAAPI CASQGAMGSL LGKMEELLVA PDGSRLPKGV KDRMLLLGGD LGVVAAYLAD 60 LSELEDPPPT AKRWMREVRE LSYDIEDYID EFCAAPRPGR RANTMARFVC RIGCVKVARL 120 PKKLKRHQQM GKMVSQFRIY VQEAIERHGR YGLDCCDHRR RYVSFGPMLP SRPYGEEDAQ 180 LVIDGRVSEF IERLANDEDQ KLKVVSVVGS SGIGKTTLAK QFYNRIGGQF DCRAFVRVSR 240 KPDMKRIFRE MFYQVQRKQP PDDYKELTLI DSIREYLQDK RYLIIIDDLW AASAWDLINQ 300 AFPERLFGSE SDCPQQFKEV SNKIVQICGG LPLATTNLAS LLASQPVILM DLCLYIRDSL 360 SSAFRTNSSI EGTRQVLNLS YNNLPHYLKT CLLYLNMYPE GYKICKDDVV EKWVAEGFID 420 QIEGRDLKKV AGSYFDELID RRFLQPSRLN YNNEVSTCTI HDEVRDLIAY KSLEESFVLV 480 LDCYQKDVEL SDKVRRLSVH FGDTKYAKIP TNIRTSEVRS LTFFGLCKCM PSLTEFKLLR 540 VLNLQLSGHV GDELLDLSGI SELFQLRYLK IACNIRTELP SQMRGLKYLE TLQMDTTLTA 600 VPWDIIYLPC LLHLHLPFDT NMMDLIGRMT PPSTLLSLEP SSSNSLPSRG IISNLNNLRD 660 IHLTFCTPPS KYIERNMEVL GSLLGRLSNL KNLILVSSSS QKNIMVSGAL EVNISWEGLA 720 PPPLLQKFEW LLDNCIFSRV PRWIEKLGNL RILKIAVREL LKNSVDILKG LSALTALSLS 780 MHAIPVERII FDNVGFSILK YFKFNCSTVP WLKFEAGAMP NLRKLKLGFN VLRKDLHGTT 840 PISIGYLPSV KEISVKIHGV GSDAESVLTY TVSNHPNNPR INEKLVDWTT YGEGGRHMVI 900 KEKDHGFQEE QNEQEHLDKY KQAEIRISTS ANFLDIKQIL EDAINRWLCP SEICEILKNY 960 RSFFLATEPP NKPPSGSLFV FDRKILRYFR NDGHNWRKKK DGMTVKEDHE RLKCDYLSFR 1020 IRLTVVCQSS LEVLTCLNAT MHMGKKMRIS KGGCTGCWKS VGGPYPKAFS KAELEGPLTS 1080 PVLKKIKTLF FLRALSPEKK KTTHLPCGKS AHEAPHLECY EIAPPKNGFA HLPRSLPRVT 1140 QTEKATPPFA LQEAAAFALG SVCMEGSSDA AIARTSDGNK CLLEAASAVE VVALSWRDGL 1200 FEGAAVAAGI VITMPTTAFG SVRLWFGVCS TLIEAASTAR SLRTGALLRL VLHRPAFALR 1260 RFTMLFCCFA SYQPSQSPPF LVVIDRRRLG PSPLRVHSVT GDSSVTKNNF QGGSSVTENS 1320 FQQHDESLEA SICYPFLKTA SDIEKGSFKK TDSFTRWGSK EPADVDDSQI QSSCIKETDS 1380 SIEASSREPM DLFTVAPEVL HDQLFSTVSS WTFPDSKAKF SSATGDSSAT DNTFQQNDGS 1440 LAAAIGCPIL KTASDILKDS FKKADSCTRW MGKELAEVDY SQIQSSCIEE ADSTIKASSR 1500 EPLDQFNVAP MDLQDHLFSI VDILPRWTYA GSMTKVLVTG TFLHTKQVTE RFRWSCMFGE 1560 VEIPAEISAD GTLRCYSPPH KPGRVPFYVT CSNRLACSEV REFEFRPSDS QYMDAPSPLG 1620 ATNKFYFQIR LDNLLSLGPD VYQATITNPC KEMIDLSKKI CSLLANNDEP LSDDQQDQYA 1680 ENLIKEKLHD WLLYKVGDGG KGPSVLDDEG LGVLHLAAAL GYDWAIRPTV TAGVNINFRD 1740 FHGWTALHWA AFCGRERTVV ALIALGAAPG ALTDPHPNYP AESTPADLAS ANGHKGISGF 1800 LAESSLTSHL RALNLKEANM SEISGLPGIG DITERNASQP AIGDSLGAVR NAAQAAARIY 1860 QVFRVQSFQR KQAAHVRGHQ VRKHYRKIVW SVGIVEKAIL RWRRRRAGLR GFRPTEGAIE 1920 SSSGGTSSNL VKDKPAGDDY DFLQEGRKQA EERLQKALAR VKSMAQYPDA RDQYQSILNV 1980 VSKMQESQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 3e-38 | 47 | 762 | 34 | 778 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KN538730.1_FGP048 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC107314 | 0.0 | AC107314.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence. | |||
| GenBank | AC113335 | 0.0 | AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence. | |||
| GenBank | AK066788 | 0.0 | AK066788.1 Oryza sativa Japonica Group cDNA clone:J013087A12, full insert sequence. | |||
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
| GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0E0IR93 | 0.0 | A0A0E0IR93_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA10G07200.1 | 0.0 | (Oryza nivara) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP608 | 38 | 140 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G22300.2 | 1e-115 | signal responsive 1 | ||||
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