PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538724.1_FGP004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 378aa    MW: 43671.4 Da    PI: 7.3508
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538724.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.87.8e-29371472101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEE CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweF 81 
                        Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+Y   +++  +k+s +            +++ weF
  KN538724.1_FGP004  37 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfyslrfqgfrkiDPDRWEF 127
                        9**********************************************************888888777664.358888877765449***** PP

                        EESXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  82 khksFkkgkkellekikrkk 101
                        +++ F +g+++ll+ ikr++
  KN538724.1_FGP004 128 ANDGFLRGQRHLLKMIKRRR 147
                        ******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3333146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-4733146IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3133146IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-143760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.4E-2737146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-147587IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-1488100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEKMVKEEWP PSSPEEGEEG EAPRPMEGLH EVGPPPFLTK TFDLVADPAT DGVVSWGRAG  60
SSFVVWDPHV FAAVLLPRFF KHNNFSSFVR QLNTYFLVRT NYLNKRSHFY SLRFQGFRKI  120
DPDRWEFAND GFLRGQRHLL KMIKRRRPLS YLPGSQQALG TCLEVGQFGL DEEIDRLKRD  180
KNILLAEVVK LRHEQQSTKA NMRAMEERLQ HAEQKQVQMM GFLARAMQNP DFFHQLIHQQ  240
DKMKGLEDTF SKKRTRSIDI VPFLNPREVS QGDQLESTLL FDPRPFAELN DEPAKSELEN  300
LALNIQGLGK GKQDVNRTRN QPRNQASNET ELTDDFWEEL LNEGARDDAG IPGMERRRPR  360
YVDALAQKLG YLSNSSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-213514618120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538724.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0D3FE470.0A0A0D3FE47_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GH510.0A0A0E0GH51_ORYNI; Uncharacterized protein
STRINGONIVA03G04400.10.0(Oryza nivara)
STRINGOBART03G04630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-96heat shock transcription factor A6B