PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538724.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 378aa MW: 43671.4 Da PI: 7.3508 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 91.8 | 7.8e-29 | 37 | 147 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweF 81 Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa +Lp++Fkh+nf+SFvRQLn+Y +++ +k+s + +++ weF KN538724.1_FGP004 37 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfyslrfqgfrkiDPDRWEF 127 9**********************************************************888888777664.358888877765449***** PP EESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 82 khksFkkgkkellekikrkk 101 +++ F +g+++ll+ ikr++ KN538724.1_FGP004 128 ANDGFLRGQRHLLKMIKRRR 147 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-33 | 33 | 146 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-47 | 33 | 146 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.98E-31 | 33 | 146 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.8E-14 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.4E-27 | 37 | 146 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-14 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-14 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEKMVKEEWP PSSPEEGEEG EAPRPMEGLH EVGPPPFLTK TFDLVADPAT DGVVSWGRAG 60 SSFVVWDPHV FAAVLLPRFF KHNNFSSFVR QLNTYFLVRT NYLNKRSHFY SLRFQGFRKI 120 DPDRWEFAND GFLRGQRHLL KMIKRRRPLS YLPGSQQALG TCLEVGQFGL DEEIDRLKRD 180 KNILLAEVVK LRHEQQSTKA NMRAMEERLQ HAEQKQVQMM GFLARAMQNP DFFHQLIHQQ 240 DKMKGLEDTF SKKRTRSIDI VPFLNPREVS QGDQLESTLL FDPRPFAELN DEPAKSELEN 300 LALNIQGLGK GKQDVNRTRN QPRNQASNET ELTDDFWEEL LNEGARDDAG IPGMERRRPR 360 YVDALAQKLG YLSNSSQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-21 | 35 | 146 | 18 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | LKMIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538724.1_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344489 | 0.0 | AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649439.2 | 0.0 | PREDICTED: heat stress transcription factor A-2d | ||||
Swissprot | Q8H7Y6 | 0.0 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | A0A0D3FE47 | 0.0 | A0A0D3FE47_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GH51 | 0.0 | A0A0E0GH51_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G04400.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART03G04630.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 4e-96 | heat shock transcription factor A6B |