PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538723.1_FGP062

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 305aa MW: 32381.8 Da PI: 5.8297

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538723.1_FGP062	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.4	2.1e-30	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ KN538723.1_FGP062 1 MRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 52 79*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	1.7E-7	1	51	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.2E-22	1	52	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.87E-14	1	53	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.967	1	55	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-26	1	53	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MRWTTALHAR FVHAVELLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKSTDRSS 60 HIASGEAQLQ QQAGMEVAME AAAGGGGDGG GGGVVLPMMP ACDDMVGICS SPAATSSAAA 120 YFLCATTTSI ATAPLAVVVP SPPAPTIPTR FHECIYGDVD VVIQSISMLR NVLLHGIDKS 180 CLALTFLEHR RTDQTPVLEK GVAIVDSLHR CQKHNYSPVL QDALHQGAEE DHLITGNLPM 240 GGASAQASIE AMATTNSSSP ASSSPSLASL EQLLPEDSFA PNLEISLGRQ NWNMDHPEEL 300 SLKYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538723.1_FGP062

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108408	0.0	AK108408.1 Oryza sativa Japonica Group cDNA clone:002-142-G11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629095.1	1e-140	transcription factor LUX
TrEMBL	Q7Y0E4	1e-178	Q7Y0E4_ORYSJ; Uncharacterized protein OSJNBa0079B15.11
STRING	OGLUM03G35130.1	1e-141	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	6e-32	G2-like family protein