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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538722.1_FGP035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 232aa MW: 27218.1 Da PI: 5.1036 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.1 | 1.7e-28 | 109 | 159 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl KN538722.1_FGP035 109 EKALTFELVSQYFYMPITQAARELNVGLTLLKKKCRELGIPRWPHRKMKSL 159 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.974 | 95 | 179 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.0E-22 | 112 | 159 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEPSQEHSWW PYCTSLCPDS YLLEEEALFS SLSFPSFHPQ PVYSTVMQSN VLQDELGVIF 60 EDDVLKYWDE MEQSENKVEK SEKGLPLLYY GDENGAASKI MRDDVRSEEK ALTFELVSQY 120 FYMPITQAAR ELNVGLTLLK KKCRELGIPR WPHRKMKSLQ TLINNVQVLQ EASKANNEEQ 180 LRMLVEMLQE ERRLLEQKPY VQLEEKTKRL RQACFKANYK KRRLLALEAG EP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538722.1_FGP035 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003509 | 0.0 | AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01. | |||
GenBank | AP003569 | 0.0 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641922.1 | 1e-170 | protein RKD1 isoform X2 | ||||
Swissprot | Q9M9U9 | 1e-43 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A0P0WU77 | 1e-168 | A0A0P0WU77_ORYSJ; Os06g0228950 protein | ||||
STRING | OS06T0228950-00 | 1e-169 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-37 | RWP-RK domain-containing protein |