PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538719.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 22796.5 Da PI: 10.1212 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.7e-07 | 103 | 150 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WTt + + +a + + + +W +ar +g g++ ++k ++ k+ KN538719.1_FGP004 103 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 150 7*****************99*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.529 | 99 | 155 | IPR017884 | SANT domain |
SMART | SM00717 | 5.8E-6 | 100 | 153 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.07E-11 | 102 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00328 | 103 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGWPRAWLLA RGFRGFRSRR PLEAIRHHSL APMPQINYQA DIVSQRDQEI QYPWLVTFVF 60 ADATDVKEPI CHFLFIENLE VHSTLNYLPI TVLRKSNMRM SSSWTTKQNK VFERALAIYD 120 RDTPDRWQNV ARAVGGGKSV DDVKRHYEKL IKDVDRIDST GGHQGSHYNS SNASSSSSSN 180 SRGSANEDQR RRYHNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-18 | 104 | 159 | 11 | 65 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538719.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT830717 | 1e-156 | CT830717.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA008A17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627086.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_015627089.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878627.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878628.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878629.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878630.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
Refseq | XP_025878631.1 | 1e-48 | protein RADIALIS-like 3 isoform X2 | ||||
TrEMBL | A0A0D9YX44 | 9e-64 | A0A0D9YX44_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G30170.3 | 1e-64 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-22 | RAD-like 6 |