PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538716.1_FGP050
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 303aa    MW: 33303 Da    PI: 10.308
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538716.1_FGP050genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.29.2e-3235134298
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                        ++ r+w+ +De+++L++li+++ak+g+   +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++   ++ +ksg++p++ +ehd++++e
  KN538716.1_FGP050  35 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYE 126
                        578************************888999*************************************99899***************** PP

             DUF573  91 lskkiWgs 98 
                        lskk+Wg+
  KN538716.1_FGP050 127 LSKKVWGT 134
                        ******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-2837133IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDASRRPAAA SSQSQRRSKR PRSSPTQHSP EQHKRPPRVW NPQDEVTILR ALISYRAKNG  60
ALPGSSQDTG KLHNMIRGQL SVKASTTQLS DKVRRLKHKY NLILTRVTKS GRDPDLPTEH  120
DREVYELSKK VWGTKSGGAG AGSGGGGGGG GGGGRVYENA EVVQSDEEQG SRDDSDEDME  180
SGWDDRDHRN RRLKAIVVAN GNGNAVTGGR SVHGNGSGKG DVSDKGKDMY PYLWEAVEEL  240
SKEHPSGTAF RKAFGVLDGS RARAMEEKLN RFRLSEIRQQ LRRMDLMKET IKMVLDALEG  300
SDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538716.1_FGP050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0STOREKEEPER protein
TrEMBLA3BTZ50.0A3BTZ5_ORYSJ; Uncharacterized protein
TrEMBLQ0J5460.0Q0J546_ORYSJ; Os08g0467600 protein
STRINGOGLUM08G18410.10.0(Oryza glumipatula)
STRINGORGLA08G0154000.10.0(Oryza glaberrima)
STRINGORGLA09G0184000.10.0(Oryza glaberrima)
STRINGOBART08G17590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.17e-15DNA-binding storekeeper protein-related transcriptional regulator