PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538715.1_FGP024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 561aa MW: 60781.2 Da PI: 5.7271 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.3 | 4.1e-21 | 164 | 219 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k KN538715.1_FGP024 164 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 219 688999***********************************************999 PP | |||||||
2 | START | 42.4 | 1.9e-14 | 270 | 403 | 1 | 113 |
HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela +a++elv++a+++ep+W e + ++e+ ++f+++ + ++ea+r+++vv+m+++ lve l+d++ qW+ + +a+t KN538715.1_FGP024 270 ELAVAAMEELVRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAAT 360 57899********************99999*********998889*******************************.999999988888888 PP EEEECTT............EEEEEEEEXXTTXX-SSX.EEEEEEE CS START 82 levissg............galqlmvaelqalsplvp.RdfvfvR 113 le + g++ +++ + p++p R f f+R KN538715.1_FGP024 361 LEDVGVMtrksahdpgrppGIILNAATSFWL--PVPPsRVFDFLR 403 8766443445555555666666666666666..666666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 150 | 219 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-20 | 151 | 221 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 161 | 221 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-20 | 162 | 225 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.49E-20 | 163 | 222 | No hit | No description |
Pfam | PF00046 | 1.5E-18 | 164 | 219 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 196 | 219 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 16.174 | 261 | 403 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-8 | 271 | 403 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.11E-19 | 363 | 546 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MADDAQELCD NNDEGNNGLR CLHYWCVHIF VYALREREKM MIPGRNMSPA MIGRPNGGGG 60 GGGVAYASSS SALSLGQSLL DGHHHQLPSL LQQHHNGHHL LDQHQQHQHQ LPPQATTTSE 120 SDGRAPRDEL EMSKSGGSDN LESGGGGGGG GSGDDQDPNQ RPRKKRYHRH TQHQIQELEA 180 FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKT QHERHENNAL RAENEKLRAE 240 NMRSPLDHMG MPGAGADVFG ADFDKSLVIE LAVAAMEELV RMAQLGEPLW APALGGEALG 300 EEEYARTFPR GLGPKSPELR SEASRETAVV IMNHVSLVEM LMDVGQWTAL FSSIVSRAAT 360 LEDVGVMTRK SAHDPGRPPG IILNAATSFW LPVPPSRVFD FLRDDSTRSE WDILSNGGVV 420 QEMAHIANGR DHGNAVSLLR VNNANSNQSN MLILQECCTD ATGSYVIYAP VDVVAMNVVL 480 NGGDPDYVAL LPSGFAILPD GPDGGGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC 540 TVERIKAAIT GDNGVAPPCP R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538715.1_FGP024 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318563 | 0.0 | AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648539.1 | 1e-172 | homeobox-leucine zipper protein ROC7 | ||||
Swissprot | A2YR02 | 1e-163 | ROC7_ORYSI; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | M8AUY8 | 1e-178 | M8AUY8_AEGTA; Homeobox-leucine zipper protein ROC7 | ||||
STRING | EMT08262 | 1e-179 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25159 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 1e-99 | homeodomain GLABROUS 2 |