PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538715.1_FGP024
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 561aa    MW: 60781.2 Da    PI: 5.7271
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538715.1_FGP024genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-21164219156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  KN538715.1_FGP024 164 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 219
                        688999***********************************************999 PP

2START42.41.9e-142704031113
                        HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
              START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                        ela +a++elv++a+++ep+W      e + ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+t
  KN538715.1_FGP024 270 ELAVAAMEELVRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAAT 360
                        57899********************99999*********998889*******************************.999999988888888 PP

                        EEEECTT............EEEEEEEEXXTTXX-SSX.EEEEEEE CS
              START  82 levissg............galqlmvaelqalsplvp.RdfvfvR 113
                        le +               g++    +++ +  p++p R f f+R
  KN538715.1_FGP024 361 LEDVGVMtrksahdpgrppGIILNAATSFWL--PVPPsRVFDFLR 403
                        8766443445555555666666666666666..666666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-23150219IPR009057Homeodomain-like
SuperFamilySSF466891.59E-20151221IPR009057Homeodomain-like
PROSITE profilePS5007117.394161221IPR001356Homeobox domain
SMARTSM003891.1E-20162225IPR001356Homeobox domain
CDDcd000863.49E-20163222No hitNo description
PfamPF000461.5E-18164219IPR001356Homeobox domain
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
PROSITE profilePS5084816.174261403IPR002913START domain
PfamPF018522.6E-8271403IPR002913START domain
SuperFamilySSF559613.11E-19363546No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MADDAQELCD NNDEGNNGLR CLHYWCVHIF VYALREREKM MIPGRNMSPA MIGRPNGGGG  60
GGGVAYASSS SALSLGQSLL DGHHHQLPSL LQQHHNGHHL LDQHQQHQHQ LPPQATTTSE  120
SDGRAPRDEL EMSKSGGSDN LESGGGGGGG GSGDDQDPNQ RPRKKRYHRH TQHQIQELEA  180
FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKT QHERHENNAL RAENEKLRAE  240
NMRSPLDHMG MPGAGADVFG ADFDKSLVIE LAVAAMEELV RMAQLGEPLW APALGGEALG  300
EEEYARTFPR GLGPKSPELR SEASRETAVV IMNHVSLVEM LMDVGQWTAL FSSIVSRAAT  360
LEDVGVMTRK SAHDPGRPPG IILNAATSFW LPVPPSRVFD FLRDDSTRSE WDILSNGGVV  420
QEMAHIANGR DHGNAVSLLR VNNANSNQSN MLILQECCTD ATGSYVIYAP VDVVAMNVVL  480
NGGDPDYVAL LPSGFAILPD GPDGGGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC  540
TVERIKAAIT GDNGVAPPCP R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538715.1_FGP024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.11e-172homeobox-leucine zipper protein ROC7
SwissprotA2YR021e-163ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLM8AUY81e-178M8AUY8_AEGTA; Homeobox-leucine zipper protein ROC7
STRINGEMT082621e-179(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2515933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.41e-99homeodomain GLABROUS 2