PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538714.1_FGP072
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 315aa    MW: 33268.5 Da    PI: 6.2737
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538714.1_FGP072genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.33.2e-23188227241
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers 41 
                        +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkv   
  KN538714.1_FGP072 188 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVHDG 227
                        8************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-21177227IPR003657WRKY domain
PROSITE profilePS5081118.59182224IPR003657WRKY domain
SuperFamilySSF1182901.05E-18183225IPR003657WRKY domain
SMARTSM007742.7E-17187272IPR003657WRKY domain
PfamPF031065.6E-18188226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEEWKDSNHR GADYLMTMPM QNFLADAFPP PELLEGEGGF EKHGLSVAGQ ASPTTGKLHM  60
LGGANDSNPI RFESPPIEEG SGAFSFKPLN LASSHYAAAE KTKSLPNNQH QSLPISVKTE  120
ATSIQTAQDE AAANQLMQPQ FNSGKLSRAA PDTVAADAAG EGQPAAGDAK GDSSSAAVAV  180
AAAAAVAEDG YSWRKYGQKQ VKHSEYPRSY YKCTHASCAV KKKVHDGAAT AQLGESPEGV  240
DVTSAVSDEV DRDDKAAHEA GLLRHHGHEH GVEGGARAAG GDPDDERGRH PRRRLPVAQV  300
RAEGRQGQSQ PKMST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-12171229159Probable WRKY transcription factor 4
2lex_A2e-12171229159Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538714.1_FGP072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
GenBankAY3418510.0AY341851.1 Oryza sativa (japonica cultivar-group) WRKY10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.11e-90probable WRKY transcription factor 2 isoform X2
RefseqXP_015634498.14e-92WRKY transcription factor SUSIBA2 isoform X1
TrEMBLA0A0E0PAE11e-122A0A0E0PAE1_ORYRU; Uncharacterized protein
STRINGORUFI04G17090.11e-122(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-14WRKY DNA-binding protein 3