PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538713.1_FGP088
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 976aa    MW: 105129 Da    PI: 5.6083
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538713.1_FGP088genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.11.1e-06314345132
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeeree 32 
                        r++ +++t+eq++++e+lF+++++p++++r++
  KN538713.1_FGP088 314 RKNYHRHTAEQIRIMEALFKESPHPDERQRQQ 345
                        788999************************98 PP
2START172.42.8e-544747002206
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                        la +a++elv + +++ep+Wv+ +    +++n+de+++ f ++++         s+ea+r++g+v  ++++lv  ++d+  +W+  ++    
  KN538713.1_FGP088 474 LATRALDELVGMCASGEPLWVRGVetgrDILNYDEYVRLFRRDHGgsddemagWSVEASRECGLVYLDTMQLVHAFMDVD-KWKDLFPtmis 564
                        78899*************************************999***********************************.99998888888 PP

                        EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
              START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                        ka+tle is+g      g+lqlm+aelq l+p+vp R+ +f+Ry+++l a++w+ivdvS d  +     ss +R+ + pSg+lie+  ng++
  KN538713.1_FGP088 565 KAATLEMISNGeddgrdGVLQLMYAELQTLTPMVPtRELYFARYCKKLAAERWAIVDVSFDDSETGVHASSAARCWKNPSGCLIEEQNNGRC 656
                        ***********************************************************9888887779*********************** PP

                        EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        kvtwveh+ ++  ++  l+r +  sg+a+ga +wva+lq qce+
  KN538713.1_FGP088 657 KVTWVEHTRCRRCTVAPLYRAVTASGVAFGAGRWVAALQLQCER 700
                        ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-5297345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-8300345IPR009057Homeodomain-like
CDDcd000860.0013314345No hitNo description
PROSITE profilePS5084839.648464703IPR002913START domain
SuperFamilySSF559616.87E-31465700No hitNo description
CDDcd088759.56E-111468699No hitNo description
SMARTSM002349.2E-47473700IPR002913START domain
PfamPF018521.9E-44474700IPR002913START domain
SuperFamilySSF559612.75E-6722825No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MEVAEAAGDG VAGRRQQEEA SGAAPFGRSS SLLGAAGGAA GFDGALRVEH LFGFLPSSPI  60
ELKDLRSQLH QAADCCEKAF LDTEKKKLIL ESTKGYICDA IVAVIDHLGT VSSKLEHQLQ  120
EKIEITQTEK KLNFLKQRLL TCEQYAITLK LLTVRGDNDA IQYHRRYLSQ STGGTKEENG  180
ANSRKDDVKL VEYNSPTIPG AIRTFKPYDI QSTIGRERSV ATTDSESPTT DAKSSFSFRA  240
EAGVFGRKNG PAASGGDGVE EGDEEVQAAG EAAVEISSEN AGPGCSQSQS GGGSGEDGGH  300
DDDDGEGSKK KKRRKNYHRH TAEQIRIMEA LFKESPHPDE RQRQQAVQER HENSLLKSEL  360
EKLQDEHRAM RELAKKPSRC PNCGVVAASS AAAADAATAA DTREQRLRLE NAKLKAEIER  420
LRGTAGKSAA DGVASPPCSA SAGATQTNSR SPPLHDHDGG FLRHDDDKPR ILELATRALD  480
ELVGMCASGE PLWVRGVETG RDILNYDEYV RLFRRDHGGS DDEMAGWSVE ASRECGLVYL  540
DTMQLVHAFM DVDKWKDLFP TMISKAATLE MISNGEDDGR DGVLQLMYAE LQTLTPMVPT  600
RELYFARYCK KLAAERWAIV DVSFDDSETG VHASSAARCW KNPSGCLIEE QNNGRCKVTW  660
VEHTRCRRCT VAPLYRAVTA SGVAFGAGRW VAALQLQCER MVFAVATNVP TRDSTGVSTL  720
AGRRSVLKLA HRMTSSLCRT AGGSHDMAWR RAPKGGGGGG DDIWLTSREN AGDDPGEPQG  780
LIACAAASTW LPVNPTALLD LLRDESRRPE WDVMLPGKSV QSRVNLAKGK DRTNCVTAYA  840
ARPEEEEESG GKWVLQDVCT NPCESTIAYA AIDAAALQPV IAGHDSSGVH FLPCGFISVM  900
PDGLESKPAV ITASRRGGEA SGAGSLVTVA FQVPASPSAA AATLSPDSVE AVTVLVSSTL  960
RNIRKALGCD SCEEEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313KKKKRR
2308314KKKKRRK
3308315KKKKRRKN
4309313KKKRR
5309314KKKRRK
6310314KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538713.1_FGP088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075730.0AK107573.1 Oryza sativa Japonica Group cDNA clone:002-130-D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644459.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A0E0C8040.0A0A0E0C804_9ORYZ; Uncharacterized protein
STRINGOMERI01G28090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-180HD-ZIP family protein