PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538713.1_FGP014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 246aa MW: 26202.3 Da PI: 7.675 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.3 | 6.8e-31 | 53 | 165 | 3 | 113 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + ++++ sa ++++ KN538713.1_FGP014 53 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHLcmGHHHHLPSAMPLMHHHHGH 144 78***************************************************************999444332222222222111112222 PP TCP 93 saakskksqksaasalnlake 113 ++ ++ + aa+a +la+e KN538713.1_FGP014 145 HHHADDDKYHVAAAAAALAAE 165 222333333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.951 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.3E-27 | 54 | 116 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MILGSNQAAA AAAAAAEEEA AELARKHTAA VATSRQWSAQ TESRIVRVSR VFGGKDRHSK 60 VKTVKGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAARHEID KLPPLQFPPQ 120 DHLCMGHHHH LPSAMPLMHH HHGHHHHADD DKYHVAAAAA ALAAEKEAAA AGGGGGGGGD 180 DVDGGGAAHM VGRFPAGGYH RFMGLNNPLG MLVFYSSEAE QFTVDNLGSQ GLSLSSARAF 240 HDQTGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538713.1_FGP014 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071964 | 0.0 | AK071964.1 Oryza sativa Japonica Group cDNA clone:J013079O19, full insert sequence. | |||
GenBank | AP003274 | 0.0 | AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626531.1 | 1e-102 | transcription factor PCF6-like | ||||
Refseq | XP_015626542.1 | 1e-102 | transcription factor PCF6-like | ||||
TrEMBL | B9ET55 | 1e-102 | B9ET55_ORYSJ; Uncharacterized protein | ||||
STRING | OMERI01G28260.1 | 1e-105 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-41 | plastid transcription factor 1 |