PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538710.1_FGP044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 464aa MW: 51233.8 Da PI: 6.2383 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +++G W++I +++g ++t+ q++s+ qk+ KN538710.1_FGP044 59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.92E-15 | 53 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.318 | 54 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 56 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-15 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.8E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MARFQETKAR NDQGPVADHV GHQNLMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE 60 KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNCNSLG 120 AAPSIQIPPP RPKRKPVHPY PRKLGSTASK NVPALKQLEK PQLQVQSLYD QDNGSPTSVL 180 TVPQIRADTL GSESGGSPTS TIDIEERCPT PSIATAELAV ELPPTNDEEV KGNGDHEVTC 240 DRSGVPVLRL FGKRVMVNDL HQMSAPDAGN LQTVADMEVD ASAETPTSGT GKFSSHGAAE 300 ANTWNPWLTN TQQFLYYLPN GQIFSVHSAL PCFTYHNEGV TCTQFSNPQV VASDQQHQHQ 360 TSEAVDYKGI QREGSWTESN TSSSSVPETA THNSETTESY RNGNRNRNED EMVPSPDSRK 420 CVSPGSNCRR GFVPYKRCVA DSEALLKSQA PQEEADGEMT RLCL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538710.1_FGP044 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101209 | 0.0 | AK101209.1 Oryza sativa Japonica Group cDNA clone:J033031A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636284.1 | 0.0 | uncharacterized protein LOC4336779 | ||||
TrEMBL | A0A0E0DHN3 | 0.0 | A0A0E0DHN3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A2XWU1 | 0.0 | A2XWU1_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI04G24740.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA04G22180.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 9e-35 | MYB_related family protein |