PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538708.1_FGP092
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 349aa    MW: 37160.1 Da    PI: 8.1211
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538708.1_FGP092genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.8e-113055227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       +++ C ++ +tG+Ck+G++CkF+H++
  KN538708.1_FGP092 30 GEKDCTYYVKTGHCKFGSTCKFHHPE 55
                       5789********************96 PP
2zf-CCCH37.83.2e-12183209127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++++tG Ck+G+ Ck++H++
  KN538708.1_FGP092 183 PGQPECQYYLKTGSCKFGSACKYHHPQ 209
                        5789*********************97 PP
3zf-CCCH29.11.7e-09231255327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +C ++ + G+Ck+G++CkF H++
  KN538708.1_FGP092 231 SQPCAYYTQHGFCKFGPTCKFDHPM 255
                        679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9012956IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-53055IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-83055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413182210IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6182209IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10184209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5186209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4188208IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69228256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6230258IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7230255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5232253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MCFELVLNGG GKTTHSAEYP ERPGQPVCEG EKDCTYYVKT GHCKFGSTCK FHHPEIGGVS  60
ETPNMYPPVQ PQPISSSHPY QHLAGWQMGR PPVLPGSFLS GSYPPMMLPS TVVPMQGWNP  120
YISPVNQVAS AGGHQTVQAG PFYGLSHQGP SAAVTYGSQY APLSSSTMPS SSSKQEPAFP  180
ARPGQPECQY YLKTGSCKFG SACKYHHPQY LNTPKSNCML SPLGLPLRPG SQPCAYYTQH  240
GFCKFGPTCK FDHPMGTLSY SPSASSITDL PIAPYPLNYA VAPVAPPSSS SDLRPEYLLT  300
KEFSANQSAS PGTTCGPAGA MLKAYAPHML IRPQTSGAGG MVTTHGGEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538708.1_FGP092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0D3ELY00.0A0A0D3ELY0_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Y6990.0A0A0D9Y699_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FJL40.0A0A0E0FJL4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MU560.0A0A0E0MU56_ORYRU; Uncharacterized protein
TrEMBLI1NM100.0I1NM10_ORYGL; Uncharacterized protein
STRINGOGLUM01G11340.10.0(Oryza glumipatula)
STRINGORUFI01G10840.10.0(Oryza rufipogon)
STRINGOS01T0257400-010.0(Oryza sativa)
STRINGONIVA01G12440.10.0(Oryza nivara)
STRINGORGLA01G0090000.10.0(Oryza glaberrima)
STRINGOBART01G09920.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]