PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538707.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 233aa    MW: 25393.2 Da    PI: 7.6946
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538707.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP45.61.9e-1420504878
                       SEEETTT--SS--S-STTTT-------S--- CS
                SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       rfh+l efD++k+sCr+rL++hn+rrrk+q+
  KN538707.1_FGP007 20 RFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 50
                       9***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.58148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-122052IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.8E-42035IPR004333Transcription factor, SBP-box
PfamPF031105.5E-82047IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAYENYANTT VSVNLNLQYR FHNLAEFDDG KKSCRKRLDG HNRRRRKPQH DALNPRSFLP  60
YHQANQFSVY PQTFPIADQN ADALMRPLDR HPPFSISFSG TFREPKQFPF MQDGGSGLGA  120
ARHDLLRPFS SPEDGANITT TRSACNGVPH GLDPECALSL LSSSLHPSPA AGISSATAPP  180
QFAPSSFSRI AASSQSVTTA FASDGGSVVG DHVLVPAVTY EDPSQAMPFS WQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13047KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538707.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336080.0AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355690.0AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.11e-156putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y11e-157SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA2ZEH11e-169A2ZEH1_ORYSI; Uncharacterized protein
STRINGOMERI11G11640.11e-169(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-13SBP family protein