PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538703.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 577aa    MW: 63919.7 Da    PI: 6.2528
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538703.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26058.81.6e-184224873095
             DUF260  30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                        ++ + ++FGasnv kll+++p   r+da+++++yeA+ar+ dPvyG+vg+il+lq+ql+ l+++l 
  KN538703.1_FGP012 422 LQELSEVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVGTILALQHQLSVLESQLF 487
                        567889*****************************************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509163.14E-202118IPR011039Transcription Factor IIF, Rap30/Rap74, interaction
PfamPF022701.3E-14100220IPR003196Transcription initiation factor IIF, beta subunit
SuperFamilySSF467852.23E-6185221IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-11185220IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5089110.496390493IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-19422487IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0005674Cellular Componenttranscription factor TFIIF complex
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAEEAKNLET ARADRSVWLM KCPTVVSRAW QEAATAAAAS SSSSDAAAGA NSSSNANPNP  60
VVAKFKMEMA QTGNGNTPKS YSLNMFKDFV PMCVFSESNQ GKLSCEGKVG HKFDMEPHSD  120
NLVNYGKLCR ERTQKSMIKN RKLMVLANDN GMSMRPLPGL VGLMSSGPKQ KEKKPLPVKP  180
SDMKRTRRDR RELENILFKL FERQPNWSLK NLMQETDQPE IGVLGQCGLQ SVTCCVQGNL  240
GYFVYSSLFL EKHILYASSD TSFGVTGGHI LDPDFGDSIY SRPSEFRNKD VEICELLTTE  300
EARRRQGLYD ELASVEISSK EKSSPSVMVM LDLGRMACRA FALGMHFLLQ ESGGDEDESF  360
DKEDSWREWR TQQKNNLVPL QSFIQSTLPF PLSLAFVSSV QQPQLMPMPP LPMPHVPFAL  420
ALQELSEVFG ASNVAKLLSR VPAALRRDAA RTVCYEAQAR IADPVYGSVG TILALQHQLS  480
VLESQLFNLR VALASAHPDT PPQHFVVLQP AHSAASTPNQ VVVNYDDLPH AVDFMDAEPA  540
ALRGLESLQL SQPLQREEDE GHRDMNLFSD SVGQRQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v1n_R1e-11324654281TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA
4v1o_R1e-11324654281TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538703.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034910.0AK103491.1 Oryza sativa Japonica Group cDNA clone:J033130N17, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-20LOB domain-containing protein 20