PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538702.1_FGP116
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 327aa    MW: 37021.6 Da    PI: 6.181
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538702.1_FGP116genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.73.7e-143066135
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k+ +
  KN538702.1_FGP116 30 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKHYE 66
                       5567766667*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-92368No hitNo description
SMARTSM004011.2E-72478IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-112965IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.3E-113265IPR000679Zinc finger, GATA-type
CDDcd002023.93E-74064No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MQFEDGGDVH VGAGEGEDGG RVTVDELTRC LRCGISANAT PHMRRGPEGR RTLCNACGIA  60
WAKHYERMLD EYRYAELQAD FHASQSFPRI PPSKMLRQAA NMYTPVVFEI FRREFEMFVD  120
SVIYSCGEDG NAFEYRVAVT DRPGEHYVSS SLNVPVPFID PQHVQSNNEL NHDTSVSNFH  180
QQALHGGAQG SQGYAPLAGI QQQQFIGSFR LNHETEAFNC FAAKWPLQTM HSFNLMFSLL  240
PFFSVGVVDY LNFLIRIFYY SHSSTTASKY FLKEKDNQIH VPALLKGRRF PTADELCCLL  300
AIWNKFSTED NQTILQSGFS VDERTIV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538702.1_FGP116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-136CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633159.11e-50protein FAR1-RELATED SEQUENCE 5
STRINGOMERI03G05760.21e-87(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.36e-11GATA-type zinc finger protein with TIFY domain