PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538702.1_FGP020
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 259aa    MW: 28570.1 Da    PI: 9.4245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538702.1_FGP020genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-1270126155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  KN538702.1_FGP020  70 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 126
                        789******************333.44555535555.779999**************98 PP
2AP237.27.1e-12158203755
                AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KN538702.1_FGP020 158 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 203
                        8999********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1570136IPR016177DNA-binding domain
CDDcd000182.29E-1770136No hitNo description
SMARTSM003802.0E-2271140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1271135IPR001471AP2/ERF domain
PfamPF008473.6E-971126IPR001471AP2/ERF domain
PROSITE profilePS5103216.87171134IPR001471AP2/ERF domain
PRINTSPR003672.7E-67283IPR001471AP2/ERF domain
PROSITE profilePS5103216.291150211IPR001471AP2/ERF domain
SMARTSM003809.4E-27158217IPR001471AP2/ERF domain
PfamPF008476.9E-7158203IPR001471AP2/ERF domain
CDDcd000181.89E-20159213No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15159211IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-15159213IPR016177DNA-binding domain
PRINTSPR003672.7E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYNAGGGGGG GGGVDGSMSI SGIKSWLRQA MYMPERSAAA LSLSVPASPP SEAPLPVVRK  60
PAQTFGQRTS QFRGVTRHRW TGRYEAHLWD NTCRKEGQTR KGRQGGYDKE EKAARAYDLA  120
ALKYWGPTTH INFPLSTYEK ELEEMKHMTR QEFIAHLRRH HQHGRWQARI GRVAGNKDLY  180
LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DISKYDVKRI CSSTHLIGGD LAVVLLATYP  240
EGGPEEPQQN AAGDLGLCT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538702.1_FGP020
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851151e-136AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.11e-146AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ1PFE11e-103AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-102CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0CW071e-152A0A0E0CW07_9ORYZ; Uncharacterized protein
STRINGOMERI03G05320.11e-154(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-100AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]