PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538701.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 448aa    MW: 48961.6 Da    PI: 9.8877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538701.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.21e-14268310547
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                        +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN +Lk 
  KN538701.1_FGP001 268 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLKR 310
                        79*************************************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-14263311No hitNo description
SMARTSM003381.5E-11264330IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.392266311IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-11268313No hitNo description
CDDcd147075.25E-25268317No hitNo description
PfamPF001702.0E-12268311IPR004827Basic-leucine zipper domain
PROSITE patternPS000360271286IPR004827Basic-leucine zipper domain
SuperFamilySSF541976.65E-12357427IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.5E-17357429IPR011146HIT-like domain
PfamPF012309.9E-11357428IPR001310Histidine triad (HIT) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MASKAGGGGV ARRGGRMWSL GRQGSMYSLT LDEVQSQLGE PLHSMNLDEL LRSVFPDGLA  60
IADGAGAGAG AATSSHQQHQ PGSGLLRQGS ITMPPELSKK TVDEVWKGIQ AAPKRNAETG  120
GGGGGRRQRE RQPTLGEVTL EDFLVKAGVV TQGSLKELSD AGNVDPVGRG VTTTGTVDLA  180
PGSHWIEQYK QQIASTDAHH HGQQGVQGAY FPNRLVPQPL NVGPGAILEP SYSDGQTSSG  240
MIGGMSDSQT PGRKRGMSGD VADKLMERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR  300
LEEENVRLKR QKESDYLFCE KFVLVTFLTK FCGKRSHLRW FMRMKSSHVK IEGSKVEQTL  360
AFRDISPQAP VHIIIIPKVK DGLSRLSKVE ERHVEVMGHL LYAAKTIAKQ ENLDDGFRIV  420
INDGPNGCEH KLDPIETVSL YITSIFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5km5_A7e-1735742952122Histidine triad nucleotide-binding protein 2, mitochondrial
5km5_B7e-1735742952122Histidine triad nucleotide-binding protein 2, mitochondrial
5km8_A7e-1735742952122Histidine triad nucleotide-binding protein 2, mitochondrial
5km8_B7e-1735742952122Histidine triad nucleotide-binding protein 2, mitochondrial
5km9_A7e-1735742952122Histidine triad nucleotide-binding protein 2, mitochondrial
5km9_B7e-1735742952122Histidine triad nucleotide-binding protein 2, mitochondrial
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538701.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627754.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLB8AB920.0B8AB92_ORYSI; Uncharacterized protein
STRINGOMERI01G31540.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27073883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.12e-61ABA-responsive element binding protein 3