PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538699.1_FGP079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 140aa MW: 15595.7 Da PI: 8.4556 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.4 | 2.4e-18 | 19 | 88 | 2 | 67 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkk 67 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + + ++++w+fF++r+++ KN538699.1_FGP079 19 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAER 88 69***************************99***************84455333335569******9876 PP | |||||||
2 | NAM | 36 | 2.1e-11 | 87 | 119 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+k+t+vfy+grap+g+kt+W m+ey++ KN538699.1_FGP079 87 EREVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 119 5688***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-32 | 15 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.885 | 18 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-15 | 20 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MSTTRSGSGG GAINDPFATP GFRFYPTEEE LLGFYLRHRL AGTRPDVERV IPVVDVYGYH 60 PSQLAAVAGE ASARDTEQWF FFCPRAEREV IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV 120 ADDADAAAML HPMAPPRVHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-14 | 1 | 118 | 1 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538699.1_FGP079 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-120 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615861.1 | 7e-76 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-35 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0E0BFG7 | 6e-82 | A0A0E0BFG7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G03170.1 | 1e-82 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.1 | 1e-35 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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