PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538698.1_FGP010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 202aa MW: 22641.5 Da PI: 9.9657 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.3 | 7e-08 | 134 | 171 | 17 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 A+rsR RK+++i+eLe+kv++L++e + e+e l++ KN538698.1_FGP010 134 AQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQ 171 99**********************98777777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-4 | 121 | 182 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.75E-7 | 130 | 175 | No hit | No description |
CDD | cd14703 | 3.20E-14 | 130 | 174 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-7 | 134 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGGGGGGQAA PWGGVQEYYA KPSSFGRHQG RPWEQGMNNL VNYRQSGGPP MPAKEKVGGH 60 HGSPSVLRDH DHGMDRRSSD ESGHDQKVGP ERKEGVPPKH AQSEADTKRA KQICNLNMLL 120 EALVWSSSIN QQYAQRSRVR KLQYIAELER KVQALQSEGI DVSAEMEFLS QQNIMLDLEN 180 KALKQRLESL AQEQLIKRFR KK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538698.1_FGP010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123517 | 0.0 | AC123517.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence. | |||
GenBank | AC137989 | 0.0 | AC137989.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0050G15, complete sequence. | |||
GenBank | AK072267 | 0.0 | AK072267.1 Oryza sativa Japonica Group cDNA clone:J023004I18, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662832.2 | 1e-113 | PREDICTED: uncharacterized protein At4g06598-like | ||||
TrEMBL | A3C9S2 | 1e-118 | A3C9S2_ORYSJ; Uncharacterized protein | ||||
STRING | OB11G15450.1 | 1e-112 | (Oryza brachyantha) | ||||
STRING | OBART11G06850.1 | 1e-113 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3310 | 36 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 3e-28 | bZIP family protein |