PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538695.1_FGP070
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 315aa    MW: 34310 Da    PI: 6.8603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538695.1_FGP070genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23104165259
                        --SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg +WrKYGqK++++s+ +prsYYrCt++   gC+++k+v++s+++ + ++i Y geH+++
  KN538695.1_FGP070 104 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCR 165
                        89**************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-2592167IPR003657WRKY domain
SuperFamilySSF1182906.02E-2396167IPR003657WRKY domain
PROSITE profilePS5081120.34698167IPR003657WRKY domain
SMARTSM007743.4E-34103166IPR003657WRKY domain
PfamPF031066.9E-23104165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTYRRHTSSW APPSMFQAIS FGDIAAELCG GEPHQAAESA DRRGDEQAAV QLAVGDVAWR  60
RRRRKKRIGR EEEEKRRGRG RAAQAEQLRS KSPFVRMVTT KELEDGRQWR KYGQKHIQDS  120
PNNPRSYYRC THRPDQGCMA TKQVQTSESN SSEFVISYYG EHTCRDPSTI PFVVEAEAPT  180
ADYANLISFR SIGGASTSRV DPLRQSRHRL MAEAVDPTPS CSFTNCHSPV LSPECASEAA  240
ALSSSLPLST VVGSAVTTPS TSIVGSAPAD YDWPSGLAGG DMAGSFPSSP SSLGFMTGSF  300
GNLPGDDDDM FGFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-1998165369OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066RRRRKKR
26076RRRRKKRIGREEEEKRR
36166RRRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538695.1_FGP070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109000.0AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646872.11e-140probable WRKY transcription factor 70
RefseqXP_015646873.11e-140probable WRKY transcription factor 70
TrEMBLA0A0D3GUZ91e-140A0A0D3GUZ9_9ORYZ; Uncharacterized protein
TrEMBLI1QD861e-140I1QD86_ORYGL; Uncharacterized protein
STRINGORGLA07G0207800.11e-141(Oryza glaberrima)
STRINGOBART07G26430.11e-141(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-20WRKY DNA-binding protein 46