PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538693.1_FGP093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 172aa MW: 18483.9 Da PI: 8.2167 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 152.1 | 5.2e-47 | 12 | 166 | 6 | 169 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 e++ yvqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls ++ ++a + +l++++++el + +e++ ++ + KN538693.1_FGP093 12 LRERLGYVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-AVNLPPSPVSA----SIELTPQMKQELDAGPPPGEYSDESSGDDREGRD 98 5799**************************************.33333333333....3456777778877777666555555444444333 PP YABBY 98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + ++d +p + +++PP ++qr Psayn+f+keei+rik+ P+i+h++afs+aaknWah+P+i + KN538693.1_FGP093 99 A-----EDDAPAPAAAAvANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 166 3.....4444444444438**************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-49 | 13 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.02E-7 | 109 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.0E-5 | 114 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSSAARHHCS GLRERLGYVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS 60 PVSASIELTP QMKQELDAGP PPGEYSDESS GDDREGRDAE DDAPAPAAAA VANKPPGRKQ 120 RTPSAYNCFV KEEIKRIKSM EPNITHKQAF STAAKNWAHL PRIQQKRGRD SC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538693.1_FGP093 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274019 | 0.0 | AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647119.1 | 1e-102 | protein YABBY 7 isoform X2 | ||||
Swissprot | A2PZN8 | 1e-103 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | I1QEG0 | 1e-101 | I1QEG0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0250200.1 | 1e-101 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-28 | YABBY family protein |