PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538693.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 424aa    MW: 45133.4 Da    PI: 7.324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538693.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.43.4e-54291571128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  KN538693.1_FGP004  29 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEVDLYKFDPWELPEKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 119
                        79****************************.89***************999999************************************** PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  ++e+vg+kk Lvfy+g+ pkg+kt+W+mheyrl
  KN538693.1_FGP004 120 MASgsTREKVGVKKALVFYRGKPPKGVKTNWIMHEYRL 157
                        **9777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-6425199IPR003441NAC domain
PROSITE profilePS5100561.65529199IPR003441NAC domain
PfamPF023657.8E-2830157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESPDSSSGS APPRVLRRQQ QQPGSAPELP PGFRFHPTDE ELVVHYLKKK AASVPLPVTI  60
IAEVDLYKFD PWELPEKASF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIM  120
ASGSTREKVG VKKALVFYRG KPPKGVKTNW IMHEYRLTDT SSSTAVATTR RPPPPITGGS  180
RGAVSLRLDE WVLCRIYKKT NKAGAGQRSM ECEDSVEDAV TAYAPSSQQH ATAAAGMAGS  240
DGAGGVAAAH GGDYSSLLHH DSHEDNFLVN GLLTAEDAAG LSTGVSSLSQ LAAAARAAAT  300
PCDATKQLLA PSPTPFNWFE AFLPRAKEFP GGLNRSGRDI GDMSLSSTVD RNLSEAGAVA  360
IDTGDAANGA NTMPAFINPL GVQGATYQQH QAIMGASLPS ESAAAAAACN FQHPFQLSRV  420
NWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-73182024171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538693.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634060.0AK063406.1 Oryza sativa Japonica Group cDNA clone:001-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645677.10.0NAC domain-containing protein 10
SwissprotA2YMR00.0NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A0E0ALI90.0A0A0E0ALI9_9ORYZ; Uncharacterized protein
STRINGOGLUM07G18780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-87NAC domain containing protein 25