PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538692.1_FGP040
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1392aa    MW: 151665 Da    PI: 7.9795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538692.1_FGP040genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031202224123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+k+F  +s +  Hi +H
  KN538692.1_FGP040 202 FECPVCNKTFEEQSRYFGHIGSH 224
                        89****************99777 PP
2zf-C2H2130.00031874896123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+k+F  +s +  Hi +H
  KN538692.1_FGP040 874 FECPVCNKTFEEQSRYFGHIGSH 896
                        89****************99777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.02327100IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.14E-63182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.108.0E-43281IPR001739Methyl-CpG DNA binding
PfamPF014293.5E-53780IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.642153181IPR007087Zinc finger, C2H2
SMARTSM003550.59153176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681202229IPR007087Zinc finger, C2H2
SMARTSM003550.018202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
PROSITE profilePS5098210.023699772IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.14E-6703754IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.108.0E-4704753IPR001739Methyl-CpG DNA binding
PfamPF014293.5E-5709752IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.642825853IPR007087Zinc finger, C2H2
SMARTSM003550.59825848IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280827848IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681874901IPR007087Zinc finger, C2H2
SMARTSM003550.018874896IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280876896IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1392 aa     Download sequence    Send to blast
MATEEELMGF ISSLAGQWVN KRMRRKLVDA SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS  60
YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT  120
SMDSQSNLPV ASATFYSHSR DQDETVADDI NSYECQQCNS TFHGQSAYAH HLITFHKVSS  180
KRRKSNKVSK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH IGSHAKYQGL TPEAFLQTLS  240
GKVGNDSFAG LSCSLQDLVG SPQLNEKTTA NEARSQHHNC STKHGGNSTR GIDLFNSNHP  300
ANFNGHNQTW CRSDEIPPTT EAQSTWTYRN NEMNCADRTV PRTGPQPNDH MDCRVSGFAE  360
ATNFNDQAGR HQGFRPSSFG TTNHCQGQII DHAVAASKHA EVNNSMKSRD VNLNSRLNTI  420
SFPIATANNE TSTALNDMNR SCITGKGFSG SFSNNDGAAS IVLPSSGLNN KISSSLGVAD  480
RSSIAARSFN AGYVYENGAS EANNIGNKNN TMVYQTSLAM RPVSPLDWRT PKAEGHDGIG  540
ELLNLVHTGY LSTLFKHSHF FSHWISLQDS CTLNVIQSKQ SHVAKNAQPK QRSSEPEASN  600
KKTTTIHKFF KFMHVFLRSV VVPSPPPCIL SPTPMPLPPA LPSSPRGVSV DLVSLSRLAD  660
PYDAELGKRT ARMTTEEELM GFISSLAGQW VSQRMRRKLV DASFFGDHLP SGWRLQLGIK  720
RKDRKAWVNC FSYVSPKGQS FATCQEVSAY LMSLLGYPEF KTDNIEYGST QQHGLCADDG  780
VNVLGVQHQI GTGMDSQSIL PVASITFSSH SRDQDETDAD DINSYECQQC NSTFHGQSAY  840
AHHLITFHKV SSKRRKSNKV SKFGEPVIGK DGKFECPVCN KTFEEQSRYF GHIGSHAKYQ  900
GLTPEAFLQT LSGKVGNDSF AGLSCSLQDL VGSPQLNEKT TANEARSQHH NCSTKHGGNS  960
TRGIDLFNSN HPANFNGHNQ TWCRSDEIPP TTEAQSTWTY RNNEMNCADR TVPRTGPQPN  1020
DHMDCRVSGF AEATNFNDQA GRHQGFRPSS FGTTNHCQGQ IIDHAVAASK HAEVNNSMKS  1080
RDVNLNSRLN TISFPIATAN NETSTALNDM NRSCITGKGF SGSFSNNDGA ASIVLPSSGL  1140
NNKISSSLGV ADRSSIAARS FNAGYVYENG ASEANNIGNK NNTMVYQTSL AMRPVSPCDL  1200
QLGFSGQKQQ ILPGYGELRP AASGSPQLGG MAANSSIPTR PSQPQFGSMA RTDALPTGPS  1260
QPGSLARPNF VPTGFSQFAS RPPTSVPPAD SSQFAGGMAR QNIPTTSEPT LVLGYTPQMV  1320
NGPPAQLGWD LSLSRMVSEG MLPVLCIWCN SQFHHFGPID AQQSGSFGFI CPACKEKMSG  1380
NPNAPNNGPW QP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538692.1_FGP040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLB8BBU60.0B8BBU6_ORYSI; Uncharacterized protein
STRINGOS08T0485700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419