PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538692.1_FGP039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 17323.7 Da PI: 8.1132 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.4e-18 | 14 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g W++Ia +++ gRt++++k++w+++l KN538692.1_FGP039 14 KGPWTPEEDEKLLHYIQKNGHGswrtlprlagtvlqspspnffrLWSAIATHLP-GRTDNEIKNFWNTHL 82 79****************************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.638 | 9 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 12 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-15 | 13 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 14 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.28E-14 | 14 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-13 | 16 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDEKLLHYIQ KNGHGSWRTL PRLAGTVLQS PSPNFFRLWS 60 AIATHLPGRT DNEIKNFWNT HLKKRLIQMG FDPMTHRPRT DFFAALPQLI ALATLRDQLA 120 ATAATASASS CGGGASSPFP WPEFFHDDPF ITDFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538692.1_FGP039 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004376 | 1e-104 | AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05. | |||
GenBank | AP014964 | 1e-104 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-104 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695646.1 | 9e-72 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 6e-55 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | B8BBV7 | 3e-81 | B8BBV7_ORYSI; Uncharacterized protein | ||||
STRING | Pavir.Fb01820.1.p | 7e-67 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 8e-52 | myb domain protein 93 |
Publications ? help Back to Top | |||
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