PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538690.1_FGP071
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 410aa    MW: 44036.2 Da    PI: 6.446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538690.1_FGP071genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-18108153147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + 
  KN538690.1_FGP071 108 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 153
                        79******************************.***********985 PP
2Myb_DNA-binding52.89e-17160204147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++T+eEd ++  a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  KN538690.1_FGP071 160 RKPFTEEEDRIIMAAHAIHGNK-WAAIAKLLV-GRTDNAIKNHWNST 204
                        789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.345103158IPR017930Myb domain
SuperFamilySSF466899.35E-30106201IPR009057Homeodomain-like
SMARTSM007171.2E-14107156IPR001005SANT/Myb domain
PfamPF002495.5E-17108153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-24109161IPR009057Homeodomain-like
CDDcd001677.33E-14110152No hitNo description
SMARTSM007176.5E-16159207IPR001005SANT/Myb domain
PROSITE profilePS5129422.74159209IPR017930Myb domain
PfamPF002499.5E-15160204IPR001005SANT/Myb domain
CDDcd001675.77E-12162205No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23162208IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSSETAASPP PNPPAADSAH SNPASMTDET HGAGAHPDES QPHRSSSSSS SPPVAVDGET  60
RVPLPVRSLP QPSHPSPPPS GEDEDDVVIT GQIAVGDAAG AAMEERVKGP WSSDEDTLLS  120
NLVEKLGPRN WTLIARGIPG RSGKSCRLRW CNQLDPQVKR KPFTEEEDRI IMAAHAIHGN  180
KWAAIAKLLV GRTDNAIKNH WNSTLRRRHC TGGRCTQGGV MERAIPERPR SVSEEPWPLG  240
NLSSLNVREA MEAPAQTVSE SYVGAWQIGD QSCKTEVVDP PYLARPVAKV GAFKPYNVGP  300
AQSSQKEMLS FATKFDSNLH PFKPENGVCK FVDPTSFAAE VPNKCGHGCC SSHGQLRKNS  360
LLGPEFNEFE DHPPISDSSF ASLVSEISSI AWMKSGLQSS DTLARSVPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-401052081104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538690.1_FGP071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085820.0AK108582.1 Oryza sativa Japonica Group cDNA clone:002-146-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630688.10.0transcription factor MYB1
TrEMBLQ8S2820.0Q8S282_ORYSJ; Os01g0850400 protein
STRINGOS01T0850400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-78myb domain protein 109