PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538689.1_FGP059
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 299aa    MW: 33804.9 Da    PI: 4.5637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538689.1_FGP059genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-0969100132
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                        +g+WT +E  +l +++k++G ++Wk++ +  g
  KN538689.1_FGP059  69 KGPWTSWENSILEKYIKKHGERNWKLVQKNTG 100
                        79*************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0516497IPR017877Myb-like domain
SuperFamilySSF466891.64E-666101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-86798IPR009057Homeodomain-like
PfamPF002497.8E-769100IPR001005SANT/Myb domain
CDDcd001677.64E-571100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATDLKFSCA HISCFILDSS TCVRDRMHRS GSDPDSDRAH WYMSNSDDES FVDKDKDCRR  60
GTVAPLLKKG PWTSWENSIL EKYIKKHGER NWKLVQKNTG LLSFYITSMF GDLYMEGSNI  120
LDRRLASKDY DSIEDQRNRI DVAAEYEISL PVLKTTNNDI FPSASIFANH GISNGNLSAL  180
STTDALQMEL PLIQFDPNNQ FVYSRAYATH LTNLALLNDQ SEELLNNIDV LNYVVMKEEL  240
SGGSLSPTIN MPCEAHTSMT PSNELVVPRY EGDVPPLQDD FTPYLYLNGA NLSIFEDIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538689.1_FGP059
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.11e-102transcription factor GAMYB
TrEMBLB8AAY91e-146B8AAY9_ORYSI; Uncharacterized protein
STRINGONIVA01G10240.11e-146(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-11myb domain protein 101