PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538688.1_FGP150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 158aa    MW: 17424 Da    PI: 9.9393
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538688.1_FGP150genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF436e-141957543
                       SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       +k  r   fskR ++i+ KA+EL +LC++ vav+ +s++
  KN538688.1_FGP150 19 DKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 57
                       56778999*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.914857IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-9868IPR002100Transcription factor, MADS-box
CDDcd002661.46E-15969No hitNo description
SuperFamilySSF554551.07E-14986IPR002100Transcription factor, MADS-box
PfamPF003192.2E-151965IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVKCRARTTR KKIEIKHGDK KVRDACFSKR HTTIFNKANE LAILCGVMVA VVFVSPNANG  60
GIFSFGYPSV SSVANRFLAN APNNTSVSSS TQSGRDVEIR ELEREEIELK EHLQASTDQN  120
KLLREAIAAR DGRQLMLLLQ SDCSELGPKG LVRGGTIY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538688.1_FGP150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342400.0AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651224.12e-65PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLQ10NZ51e-103Q10NZ5_ORYSJ; Os03g0253400 protein
STRINGORGLA03G0104600.11e-104(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2042088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-13AGAMOUS-like 29