PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538687.1_FGP147
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 643aa    MW: 72896.3 Da    PI: 7.4134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538687.1_FGP147genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-1662109148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT +Ed +l +++k++G ++Wk++ +  g+ R++k+c++rw ++l
  KN538687.1_FGP147  62 KGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHL 109
                        79******************************99************96 PP
2Myb_DNA-binding36.41.2e-11115168146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqk 46 
                        +g++++eE+ +++++++++G++ W++ a  +           gRt++++k++w++
  KN538687.1_FGP147 115 KGAFSKEEENKIINLHRKMGNK-WSRMAVDLHykyvlqplhGGRTDNEIKNYWNT 168
                        799*******************.******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.67857113IPR017930Myb domain
SuperFamilySSF466894.69E-2260166IPR009057Homeodomain-like
SMARTSM007174.8E-1461111IPR001005SANT/Myb domain
PfamPF002491.5E-1462109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2163116IPR009057Homeodomain-like
CDDcd001672.78E-1164109No hitNo description
SMARTSM007172.2E-11114172IPR001005SANT/Myb domain
PROSITE profilePS5129412.446114174IPR017930Myb domain
PfamPF002492.1E-10115168IPR001005SANT/Myb domain
CDDcd001671.86E-7117168No hitNo description
Gene3DG3DSA:1.10.10.609.5E-21117172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MGRIGGGAAP VVGRKGTTRM HGNDSDPDSD RTQRYMSNSD DESFVDKDKD CRRGTVAPVL  60
KKGPWTSWED SILEKYIKKH GERNWKLVQK NTGLLRCGKS CRLRWMNHLR PNLKKGAFSK  120
EEENKIINLH RKMGNKWSRM AVDLHYKYVL QPLHGGRTDN EIKNYWNTRI KKCKNNRWLL  180
YPANVCNDAL NEDQYGSVDP SVREKLTNNQ LEDTTSMYSA PQFSDASISN ILDRRLASKD  240
YDSIEDQRNR IEVAAEYEIP LPVLKTTNND IFPSASIFEN HGISNGNLSA LSTTDALQME  300
LPLIQFDPNN QFVYSRAYAT HLTNLALLND QSEELLNNID VLNYVVMKEE LSGGSLSPTI  360
NMPCEAHNSM AASNELVREE SRRRGAALDE MRTRVELRRA RVEELLDAKE ALSGEKARLG  420
DLQRLLRMRQ QSMIGQVAAL YPVKVFHDLP NGRNLDSNTN GAHRTLSEEN GSLPEDNGTH  480
VLNVIKLPQI HALTFLGWQI GKERRKQKDI CEKDLQRSAA VLGYAAHAVL LIASYLHVPL  540
RYPLHFGGSR SYVSDCLPSA ETASLASAER TCINMTEPKL TVYPLFVECQ EDDSTKASYA  600
IYLLHKDTEQ LLNYIGAESS GRRVFDNLQE LIRIIQSDEY VYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23581723106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538687.1_FGP147
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0669230.0AK066923.1 Oryza sativa Japonica Group cDNA clone:J013089G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.10.0transcription factor GAMYB
TrEMBLB9FKW40.0B9FKW4_ORYSJ; Uncharacterized protein
STRINGOGLUM05G22330.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-49myb domain protein 33