PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538686.1_FGP051
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 74aa    MW: 8065.82 Da    PI: 4.1808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538686.1_FGP051genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.4e-112251130
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                       rg+WT eEd+llv++++ +G g+W++ ar 
  KN538686.1_FGP051 22 RGPWTVEEDLLLVNYIAAHGEGRWNSLARS 51
                       89*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3061750IPR017877Myb-like domain
SuperFamilySSF466898.97E-91751IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-101951IPR009057Homeodomain-like
PfamPF002491.6E-82251IPR001005SANT/Myb domain
CDDcd001676.31E-72450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MDMAHERDAS SEEEVMGGDL RRGPWTVEED LLLVNYIAAH GEGRWNSLAR SADSYESTLS  60
SLASSQPAKL EAIG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538686.1_FGP051
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342302e-77AC134230.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0005J15, complete sequence.
GenBankAC1454912e-77AC145491.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence.
GenBankAK1205512e-77AK120551.1 Oryza sativa Japonica Group cDNA clone:J013130B13, full insert sequence.
GenBankAP0149592e-77AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-77CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8306632e-77CT830663.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H09, full insert sequence.
GenBankCT8341282e-77CT834128.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128J02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628446.14e-29transcription factor MYB2
SwissprotQ10MB43e-30MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A453I7S81e-28A0A453I7S8_AEGTS; Uncharacterized protein
STRINGORGLA03G0145100.11e-28(Oryza glaberrima)
STRINGTraes_4BL_4D25427CB.24e-29(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2713345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-16myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]