PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538684.1_FGP113 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 21983.1 Da PI: 6.3608 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.8e-09 | 15 | 44 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g W++eEd++l d++ ++G g+W++++++ KN538684.1_FGP113 15 KGLWSPEEDQRLRDYIVKHGLGCWSAVPAK 44 678***********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-7 | 10 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.295 | 10 | 41 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-10 | 14 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-7 | 15 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-4 | 18 | 39 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI VKHGLGCWSA VPAKAAAAAE VTSMSTTEPP 60 SLHHHHHHQI KNSSGSTTTS HDQDANLSSG GSHGGISAPA PVAEPFDQQP KSFVFTGDWM 120 PMSAAAAGQE SYSISAQHWP ASTASSGNVT PSHGGAFGDQ MSGSYGALQQ QQHQSSAAAA 180 PMAGGGGYFD LLNMGDIYGG FAATSDDLLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538684.1_FGP113 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004090 | 0.0 | AP004090.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1399_H05. | |||
GenBank | AP004867 | 0.0 | AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624260.1 | 2e-85 | transcription factor MYB24 | ||||
TrEMBL | A2X032 | 4e-89 | A2X032_ORYSI; Uncharacterized protein | ||||
STRING | OMERI02G00570.1 | 1e-116 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 7e-10 | myb domain protein 50 |