PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538681.1_FGP207

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 273aa MW: 31010.8 Da PI: 11.0386

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538681.1_FGP207	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.1	1.2e-13	125	197	27	100
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++k+++++++ G s+ k + p+ + m+++vy A+ar++dP+ Ga+g ilklqqql++lkae a+++++ KN538681.1_FGP207 125 SRKLQCMERILGFSEAEKQGIR-PNGSTVISMAAVVYLADARVEDPILGAYGRILKLQQQLDRLKAERARQHHP 197 4445555555555555544333.4455699***************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.4E-8	126	194	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEVFQDVESV RLRSRVDGSV GRDLSTCLAA GRPCTSSLSS PTPQMRNDSH SRKINSFEQI 60 RFVSSEQNKF RCSLNLQSFR VNYRRKMVDD RTVGVKRNLI VTVEDCLLSV LTFSSLTAVE 120 TADVSRKLQC MERILGFSEA EKQGIRPNGS TVISMAAVVY LADARVEDPI LGAYGRILKL 180 QQQLDRLKAE RARQHHPATY EKVSKELACS LLRCIVLRYV LFVRKVYVFF DKLKGGELRA 240 GGGRVAGGGG WREGRRRKRT RRKWSRTAYV RRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	249	GGRVAGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538681.1_FGP207

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	1e-118	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16910	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-06	LOB domain-containing protein 4