PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538681.1_FGP107
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 147aa    MW: 15595.5 Da    PI: 10.2462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538681.1_FGP107genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-0885128243
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                        g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  KN538681.1_FGP107  85 GSWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 128
                        79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.03E-1083133IPR009057Homeodomain-like
SMARTSM007176.1E-783135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-685133IPR009057Homeodomain-like
PfamPF002492.9E-785128IPR001005SANT/Myb domain
PROSITE profilePS500906.92285133IPR017877Myb-like domain
CDDcd001675.47E-691133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEFIDDDWDY QPCARVIHSR SNANAKATGA VGIPSPSRNQ PRNPSRIPPP PPAAFLRKRK  60
PLDPRAEAAE AGGGNAGGGG ESGDGSWSAG DDRALLNALK EFPKDTAMRW EKVAAAVPGK  120
TKAACMKRVT ELKRDFRSSK AASEAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538681.1_FGP107
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-147CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659147.16e-48PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ22e-28MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A0E0AR311e-54A0A0E0AR31_9ORYZ; Uncharacterized protein
STRINGOGLUM08G03650.12e-55(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-23MYB_related family protein