PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01132047.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 72aa MW: 7875.93 Da PI: 8.2278 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65 | 1.8e-20 | 21 | 70 | 1 | 50 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n ++l+ + AMDW01132047.1_FGP001 21 RCAACKFLRRRCPRDCVLAPHFPASDPHRYACVQRVFGAGNTARMLQVIT 70 6*********************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.275 | 20 | 72 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-19 | 21 | 70 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MSPGEEDVEA SSDSGGSAIR RCAACKFLRR RCPRDCVLAP HFPASDPHRY ACVQRVFGAG 60 NTARMLQVIT DH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01132047.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087096 | 1e-106 | AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-106 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-106 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690105.1 | 5e-28 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-22 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | I1PG84 | 3e-44 | I1PG84_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA03G0338000.1 | 5e-45 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19720 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-24 | LOB domain-containing protein 24 |