PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01075255.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 554aa    MW: 60532.3 Da    PI: 7.3057
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01075255.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.2e-28158211155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  AMDW01075255.1_FGP001 158 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILDLMNVENITRENVASHLQKYRL 211
                            79*******************.********************************8 PP
2Response_reg57.86.4e-2028428109
                            EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
           Response_reg  28 eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                            ++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga d+l Kp+  e+l++
  AMDW01075255.1_FGP001   2 TTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLRT 84 
                            566788899999887778*******************87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1661554IPR017053Response regulator B-type, plant
SMARTSM004481.1E-4186IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.5190IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.18E-21190No hitNo description
Gene3DG3DSA:3.40.50.23003.2E-302113No hitNo description
SuperFamilySSF521727.68E-25496IPR011006CheY-like superfamily
PfamPF000729.2E-17485IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.912155214IPR017930Myb domain
SuperFamilySSF466891.04E-19155215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-29156216IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24158211IPR006447Myb domain, plants
PfamPF002493.2E-6160210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
TTTGQAATAL KLLRENKDQF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETQT  60
VMKGITHGAC DYLLKPVRLE QLRTIWQHVI RRKNCDAKNR GNDDDAGQKA QGMNNEGENI  120
GANRNKRQSR KSRDENGDDG DDSDENSNEN GDSSTQKKPR VVWSVELHRK FVAAVNQLGI  180
EKAVPKKILD LMNVENITRE NVASHLQKYR LYLKRLSTDA SRQANLAAAF GGRNPAYINM  240
NSFGNYNAYG RYRTVPTAGH TQANNILTRM NSPSAFGVHG LLHSQPIQLG HAQNNLSTSL  300
NDLGGLNNGN MIRGAQMSTI LTGPSGNSFP NISNGAPLAT ANRSLQPLES SNQQHLSRVH  360
SSSADPFSTL VGESPQFPDL GRTTNTWQTA VPSNIQDRGH NDSMSQATLH MNGPKIEPVS  420
SFTSSNQIPL LGNEMQGQVA SLASNVPISF NQEASPFNYG SSTNSRDMLN NSHVFSNSSI  480
NTSLPNLSLD NPAVPRQTLD RGNTGIVSPM QDGRIHHQVV SNQLNYNDDL MRTTGLQRGL  540
SGGLDDIVVD MFRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25154217164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01075255.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1005300.0AK100530.1 Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626716.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0E0NAT20.0A0A0E0NAT2_ORYRU; Two-component response regulator
STRINGORUFI02G06340.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-90response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]