PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01058394.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 327aa    MW: 36569.5 Da    PI: 5.7671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01058394.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.7e-23130191259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                            +Dgy+WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  AMDW01058394.1_FGP001 130 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQEdNNDPPMFQVTYSNEHTCT 191
                            8***************************99999*******9862579*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.94E-22122191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-23123191IPR003657WRKY domain
SMARTSM007744.9E-34129192IPR003657WRKY domain
PROSITE profilePS5081117.373130193IPR003657WRKY domain
PfamPF031063.1E-25130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
YEQEAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HAMRALNVAL SVMNQPHASS  60
SSSAAAAGGG HHFPVMTMIK AESTPANSPA ADVSDNHVVG KARRSSPAKR RRINCEDKSS  120
WVYHTVVPHE DGYQWRKYGE KKIQGTHFTR SYFRCTYRDD RGCQATKQIQ QEDNNDPPMF  180
QVTYSNEHTC TTTRLINNTN NNPAALHSLT ANPNGHPDDD SDDTILTKMI KQEQQAAWLP  240
SPPPDLTTIS NNFDETPGLH VSQEVPPCSS NSSAISHYAD EFDHHQMGQQ LETTVMEEAL  300
GLGADLDDPY FYDPNLLLIY ENLMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13130190968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01058394.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX8422440.0BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLQ2QYK20.0Q2QYK2_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGOGLUM12G01320.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-18WRKY family protein