PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AMDW01040880.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 280aa MW: 31170.1 Da PI: 5.2849

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AMDW01040880.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.6	4.9e-12	35	76	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E + l++av +G + Wk++++++g R++k+c+ r+ AMDW01040880.1_FGP001 35 SDWTDKETLHLLEAVLHYGED-WKKVSHHVG-SRSEKDCIARFT 76 67***************99.*****.******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	18.483	32	83	IPR017884	SANT domain
SMART	SM00717	1.9E-9	33	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-9	34	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.09E-12	34	87	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-11	35	77	IPR001005	SANT/Myb domain
CDD	cd00167	3.24E-8	37	78	No hit	No description
Pfam	PF16495	8.4E-13	185	260	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
ADISLCARCY VRANYRPGLT SADFKRIEIT EDAKSDWTDK ETLHLLEAVL HYGEDWKKVS 60 HHVGSRSEKD CIARFTRLPF GEQFMGPKED KIQFGNDCDL NEESGSHISK RLRLTPLADA 120 SNPIMAQVAF LSAIVGSDVA VAAGQAAISA QSQVDISASE TDSSINISKE EESSCTNGLS 180 ANDLLKEASA NAQVQLEKER KAIEQSLSDI VGVQMKEIQD KIRRFEQKEL LMEKERKQLH 240 CLKELLFSDQ LAVVQHQRRP PAVTTESKDD EKPKPVISIS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AMDW01040880.1_FGP001

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064096	0.0	AK064096.1 Oryza sativa Japonica Group cDNA clone:002-100-F11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625317.1	0.0	SWI/SNF complex subunit SWI3B
TrEMBL	A0A0D9YNN2	0.0	A0A0D9YNN2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0NB42	0.0	A0A0E0NB42_ORYRU; Uncharacterized protein
TrEMBL	A3A431	0.0	A3A431_ORYSJ; Uncharacterized protein
TrEMBL	Q7F8R2	0.0	Q7F8R2_ORYSJ; Os02g0194000 protein
STRING	OGLUM02G07150.1	0.0	(Oryza glumipatula)
STRING	ORUFI02G07230.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9417	4	4