PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01040844.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 167aa MW: 19488.1 Da PI: 7.9428 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 41.1 | 3.7e-13 | 11 | 49 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++++C+C ks+C+k+YC Cf+a +Cs++C+C++CkN+e AMDW01040844.1_FGP001 11 QHRSCRCVKSNCVKLYCPCFSAYGYCSQNCHCTNCKNRE 49 6789*********************************87 PP | |||||||
2 | TCR | 33.9 | 6.2e-11 | 88 | 123 | 4 | 39 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +gC+C+kskCl CeC ++++ C+++C+C dC N AMDW01040844.1_FGP001 88 NGCRCQKSKCLVHSCECLKHEVRCTSKCQCIDCGNG 123 79*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.7E-10 | 10 | 51 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.759 | 11 | 125 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.2E-10 | 13 | 49 | IPR005172 | CRC domain |
SMART | SM01114 | 3.2E-4 | 85 | 126 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-8 | 88 | 122 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
LISARSMSND QHRSCRCVKS NCVKLYCPCF SAYGYCSQNC HCTNCKNREY YEDFVEERVD 60 MIKMKNPRAF DPKIVRVQDE NEQWMYANGC RCQKSKCLVH SCECLKHEVR CTSKCQCIDC 120 GNGPRTKYDS NIGKDQSDVS GLTYEEPTMD TMQSEHTLYP NKRPKYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-12 | 13 | 122 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-12 | 13 | 122 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01040844.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731589 | 4e-81 | AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence. | |||
GenBank | AP014960 | 4e-81 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0DAU4 | 1e-98 | A0A0E0DAU4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G02540.2 | 1e-101 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 8e-24 | Tesmin/TSO1-like CXC domain-containing protein |