PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01040763.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 234aa MW: 25775.8 Da PI: 8.7204 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8.1e-32 | 113 | 169 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k AMDW01040763.1_FGP001 113 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 169 9***************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-28 | 105 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.72 | 106 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-25 | 108 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-34 | 111 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-25 | 113 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
PFNSTSLSPF NCIYQSLPAT AQDFGTWCDM QSHKKVAAVK PVASRPSSRL RSFSMLQEDS 60 TAIDSPRLED SGRHTAYDQK KADTGKGACW DNLTVSQSVR KPNVSAKNSL SYDGYSWRKY 120 GQKQVKGSEF PRSYYKCTHP TCPVKRKVEM TPDGRIAEIV YNGEHNHPKP HPPRKPSLST 180 SVETLVATND AGLENKFEGC DQAIGSDAVV EALRGGCHCL DGFRNGNEIS DGKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-16 | 113 | 170 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01040763.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242855 | 0.0 | AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341860 | 0.0 | AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds. | |||
GenBank | BX000496 | 0.0 | BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000503 | 0.0 | BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617664.1 | 1e-108 | uncharacterized protein LOC4349534 | ||||
Refseq | XP_015619786.1 | 1e-108 | uncharacterized protein LOC4351243 | ||||
TrEMBL | A0A0E0J5R3 | 1e-154 | A0A0E0J5R3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA12G00200.1 | 1e-154 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-26 | WRKY DNA-binding protein 3 |