PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01040121.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 24691.4 Da PI: 6.4985 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.4 | 1.3e-22 | 19 | 79 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 Dgy+WrKYGqK+++g+ +prsYYrCt + gC +kk v+r+ + + ++ Y +eH+++ AMDW01040121.1_FGP001 19 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 79 9************************9888889**********98776537899*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-24 | 2 | 80 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-21 | 10 | 79 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-31 | 17 | 80 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.52 | 19 | 60 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-22 | 19 | 79 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
RRKQQTTTST MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN 60 GGGGAAGYTV AYISEHTCKS IQPSLPPVIL DTTVRTTNNH HPPAAAPVVT AVAESAARAR 120 ARSPATSSSS DMVMTSTSGD TGNWSGLHGA YACRQMIAAD EDCWGDTPAA TTTTSGSDGG 180 NSTCAEEMEL LSGPIRSPLH IAADGNWMDD LLLVSDGLID ISSANITHLF SF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-14 | 19 | 79 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01040121.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123514 | 1e-100 | AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence. | |||
GenBank | AP014967 | 1e-100 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-100 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616434.1 | 1e-112 | probable WRKY transcription factor 33 | ||||
TrEMBL | A0A0E0F1X9 | 1e-114 | A0A0E0F1X9_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA11G0202100.1 | 1e-114 | (Oryza glaberrima) | ||||
STRING | OBART11G01120.1 | 1e-114 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-15 | WRKY DNA-binding protein 46 |