PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01039452.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 173aa MW: 18555.1 Da PI: 5.2531 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 50.6 | 3.7e-16 | 1 | 38 | 23 | 59 |
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ AMDW01039452.1_FGP001 1 GYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 38 5*****998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.875 | 1 | 40 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-13 | 1 | 38 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-15 | 1 | 40 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-8 | 1 | 39 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-13 | 2 | 40 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSHHSKNSGG 60 GGGSGSKGSQ NDKSQQQPSV KEEQKDQATT TATTTTTSTI TTTNSASPVV VKEEEAALAG 120 SSEALELERV MDTTAAGVVD HSELMDHVFS ESYKPMIPET GQPDDFFADL AEL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01039452.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110912 | 0.0 | AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence. | |||
GenBank | AL607004 | 0.0 | AL607004.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634477.1 | 3e-92 | probable WRKY transcription factor 4 | ||||
TrEMBL | B9FC95 | 3e-91 | B9FC95_ORYSJ; Uncharacterized protein | ||||
TrEMBL | Q0JAI8 | 1e-91 | Q0JAI8_ORYSJ; Os04g0597300 protein | ||||
STRING | OS04T0597300-01 | 2e-92 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 9e-32 | WRKY DNA-binding protein 35 |