PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01038655.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19285.1 Da    PI: 9.9778
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01038655.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.84.9e-171664149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           krie k  r v fskRr++++ KA ELS LC+a++a +++s+ g+ + +
  AMDW01038655.1_FGP001 16 KRIEKKDARDVCFSKRRQTLFNKAGELSLLCNANIAAVVISPAGRGFSF 64
                           79****************************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.399868IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-24867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-161030IPR002100Transcription factor, MADS-box
PfamPF003194.5E-191764IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVKGKGRAGR KKVEIKRIEK KDARDVCFSK RRQTLFNKAG ELSLLCNANI AAVVISPAGR  60
GFSFAHPSVD DVADRLASMA MGIPNNHSLG GGYHDSGGVT NIVQQQKIEY VELQKSLEKS  120
EKKKRVQEAM EKERAGHLMQ SLTSEVNLLG QDELEELHNK LSALPYTSIA KFYQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01038655.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985720.0AC098572.2 Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1234_D05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638580.11e-124agamous-like MADS-box protein AGL61
TrEMBLA0A0D3G5Q71e-123A0A0D3G5Q7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PKD41e-123A0A0E0PKD4_ORYRU; Uncharacterized protein
TrEMBLA2Y2Y51e-123A2Y2Y5_ORYSI; Uncharacterized protein
TrEMBLB9FK571e-123B9FK57_ORYSJ; Os05g0303400 protein
TrEMBLI1PU841e-123I1PU84_ORYGL; Uncharacterized protein
STRINGORUFI05G11630.11e-124(Oryza rufipogon)
STRINGORGLA05G0093200.11e-124(Oryza glaberrima)
STRINGOBART05G10760.11e-124(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157431316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-16AGAMOUS-like 61