PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01038559.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 60aa MW: 6942.02 Da PI: 5.7762 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.6e-09 | 30 | 59 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+WT eEd ll ++++ +G g+W++ ar+ AMDW01038559.1_FGP001 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARC 59 89*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.8 | 25 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 26 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-8 | 27 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-7 | 30 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.43E-5 | 32 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MSQRRVAGPM GVMSKQQQEA MAEEMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01038559.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107424 | 9e-92 | AK107424.1 Oryza sativa Japonica Group cDNA clone:002-127-F10, full insert sequence. | |||
GenBank | AP002860 | 9e-92 | AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08. | |||
GenBank | AP014957 | 9e-92 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 9e-92 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633684.1 | 2e-35 | transcription factor MYB62 isoform X1 | ||||
Refseq | XP_015633690.1 | 1e-35 | transcription factor MYB62 isoform X2 | ||||
Swissprot | Q9FGY3 | 1e-13 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A0D3EJ64 | 4e-34 | A0A0D3EJ64_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9Y2R2 | 3e-34 | A0A0D9Y2R2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FFP8 | 3e-34 | A0A0E0FFP8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0JDL3 | 3e-34 | A0A0E0JDL3_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0MQW3 | 4e-34 | A0A0E0MQW3_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AD22 | 4e-34 | B8AD22_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NJX5 | 4e-34 | I1NJX5_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0JR06 | 4e-34 | Q0JR06_ORYSJ; Os01g0128000 protein | ||||
STRING | OGLUM01G02010.1 | 6e-35 | (Oryza glumipatula) | ||||
STRING | ORUFI01G01910.1 | 7e-35 | (Oryza rufipogon) | ||||
STRING | OS01T0128000-01 | 7e-35 | (Oryza sativa) | ||||
STRING | ONIVA01G01990.1 | 6e-35 | (Oryza nivara) | ||||
STRING | OPUNC01G01580.1 | 5e-35 | (Oryza punctata) | ||||
STRING | ORGLA01G0016500.1 | 6e-35 | (Oryza glaberrima) | ||||
STRING | OBART01G01830.1 | 6e-35 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.2 | 1e-13 | myb domain protein 78 |
Publications ? help Back to Top | |||
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