PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01037826.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 90aa MW: 10226 Da PI: 11.5438 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.9 | 1.3e-25 | 4 | 54 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l d++ yF+lpi++AAk+L++c+T+LK iCR++G+ RWP+Rk++s+ AMDW01037826.1_FGP001 4 TKQLRLGDIAPYFELPIAKAAKKLDICATALKGICRKHGVLRWPYRKVRSI 54 89**********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.2 | 1 | 76 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-21 | 7 | 54 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
REKTKQLRLG DIAPYFELPI AKAAKKLDIC ATALKGICRK HGVLRWPYRK VRSIDRQIAT 60 LRRSGNGDAT RNEIQTLIAS RRRIVAGLDQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01037826.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL831806 | 3e-74 | AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL954160 | 3e-74 | AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 3e-74 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664445.1 | 5e-42 | PREDICTED: uncharacterized protein LOC102713973 | ||||
TrEMBL | Q2QVF7 | 1e-54 | Q2QVF7_ORYSJ; RWP-RK domain containing protein | ||||
STRING | ORUFI12G07480.1 | 2e-55 | (Oryza rufipogon) | ||||
STRING | ORGLA12G0062200.1 | 2e-55 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8055 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 5e-14 | NIN like protein 7 |