PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01037601.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 117aa MW: 13267.6 Da PI: 9.9656 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 54.7 | 2e-17 | 32 | 114 | 2 | 89 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 + lL++cA+a+++++++ a +lL++++++ +gd+mqR+a+yf+++L+arla s+++ly+ + + +e l+++kl+ ++ AMDW01037601.1_FGP001 32 RLLLIQCAQAMATDNQQSAGELLKKIKQHTLATGDAMQRVAHYFAKGLEARLACSGKHLYQN--QVRL---SLVEYLKVYKLYMAACC 114 669********************************************************963..2222...26788888888887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.906 | 5 | 117 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.1E-15 | 32 | 114 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MEKLRIDMDN EAEKKINKKD KKGSSSKVVD LRLLLIQCAQ AMATDNQQSA GELLKKIKQH 60 TLATGDAMQR VAHYFAKGLE ARLACSGKHL YQNQVRLSLV EYLKVYKLYM AACCFTK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 58 | LKKIKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01037601.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 1e-176 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 1e-176 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-176 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616386.1 | 5e-60 | scarecrow-like protein 9 | ||||
TrEMBL | A0A0E0MIE5 | 3e-62 | A0A0E0MIE5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G20020.1 | 5e-63 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-24 | GRAS family protein |