PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01037211.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 139aa    MW: 15120 Da    PI: 5.6523
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01037211.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS137.21.8e-421132241374
                   GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                            +veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF+  +
  AMDW01037211.1_FGP001   1 MVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSS 86 
                            699****9.899****************************************************999987.***************** PP

                   GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            l  +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  AMDW01037211.1_FGP001  87 LAGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 132
                            *********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.2E-401132IPR005202Transcription factor GRAS
PROSITE profilePS5098519.8561112IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSPE RHVVEQQLLS REIRNVLAVG  60
GPARTGDVKF GSWREKLAQS GFRVSSLAGS AAAQAALLLG MFPSDGYTLI EENGALKLGW  120
KDLCLLTASA WRPIQASGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-721133248380Protein SCARECROW
5b3h_A5e-721133247379Protein SCARECROW
5b3h_D5e-721133247379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01037211.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620600.14e-93protein SCARECROW 2
SwissprotA2ZAX53e-94SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A0E0IXM35e-95A0A0E0IXM3_ORYNI; Uncharacterized protein
STRINGONIVA11G01600.18e-96(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.16e-62GRAS family protein